Report for 2011.m00153

 > 2011.m00153, length: 408, copies: 3 

MAVAERVGGAVYELKPLSYDDSYKLLSKRVFDTEDRFAPELSEVTRSILNKCGGLPLAIITIASLLASKPMQIQE

WEKTCLLYLSKYPEDAIIAKDILIWSWIAEGFITNEGEHGRSLQEIGENYFNELLNKSLIQPVDIGRICENDGQV

HACQVHDMVLEFTNQLSAEEGFVAAMPLDSEKEGILVLQTLDIRDTRSVIQLPPSFVRLRQLVRLIAHKVSLADG

LTLGNMTSLQELTCAGLTENLLQEEYLVTLAELPSLQFLRIFASNVVEVIDVERKKRRLIVHRGTCAFRCLQEFH

FYCHRMCLSFEPRAMQELQRICLQFSVWETIDVYGEIDFGLVNLPSLRNIFVDLDRFETSGEEIQEAEAAIRKAA

NDHHNHPSLDFVSVYADLSRHVYTVVKGILRQD

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	1	77	7.5e-16
NB-ARC [Pfam fs]	78	113	1e-05

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	2	138	4e-11
RPM1 [A. thaliana]	7	247	1e-12
Mla1 [Hordeum vulgare].	8	296	4e-34
Pib [Oryza sativa].	9	173	8e-23
Pi-ta [Oryza sativa]	11	252	7e-21

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2011.m00153

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)