Report for 2085.m00105

 > 2085.m00105, length: 1017, copies: 2 

MELGMFIPCTLVLLLLSYGAGGIKGGASTQDGDVNGTDLASLLDFKRAITNDPFGAMSSWNTNTHLCRWKGVTCD

QRAHRVVALDLVGQTLTGQISHSLGNMSYLTSLSLPDNLLSGRVPPQLGNLRKLVFLDLSGNSLQGIIPEALINC

TRLRTLDVSRNHLVGDITPNIALLSNLRNMRLHSNNLTGIIPPEIGNITSLNTVILQGNMLEGSIPEELGKLSNM

SYLLLGGNRLSGRIPEVLFNLSHIQEIALPLNMLHGPLPSDLGNFIPNLQQLYLGGNMLGGHIPDSLGNATELQW

LDLSYNQGFTGRIPPSLGKLRKIEKLGLDMNNLEARDSWGWEFLDALSNCTRLKMLSLHQNLLQGVLPNSVGNLS

SSMDNLVLSNNMLSGLVPSSIGNLHRLTKFGLDFNSFTGPIEGWIGSMVNLQALYLDSNNFTGNIPDAIGNTSQM

SELFLSNNQFHGLIPSSLGKLRQLSKLDLSYNNLEGNIPKEVFTVPTIVQCGLSHNNLQGLIPSLSSLQQLSYLD

LSSNNLTGEIPPTLGTCQQLETINMGQNFLSGSIPTSLGNLSILTLFNLSHNNLTGSIPIALSKLQFLTQLDLSD

NHLEGQVPTDGVFRNATAISLEGNRQLCGGVLELHMPSCPTVYKSKTGRRHFLVKVLVPTLGILCLIFLAYLAIF

RKKMFRKQLPLLPSSDQFAIVSFKDLAQATENFAESNLIGRGSYGSVYKGTLTQENMVVAVKVFHLDMQGADRSF

MTECKALRSIRHRNLLPVLTSCSTIDNVGNDFKALVYKFMPNGNLDTWLHPASGTNASNQLSLSQRIKIAVDIAD

ALQYLHHDCENPIIHCDLKPSNVLLDDDMTAHLGDFGIAHFYLKSKSPAVGDSSSICSIGLKGTIGYIAPEYAGG

GFLSTSGDVYSFGVVLLELLTGKRPTDPLFCNGLSIVSFVERNYPDVIDHIIDTYLRKDLKELAPAMLDEEKAAY

QLLLDMLGVALSCTRQNPSERMNMREAATKLQVINISYISGM

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	104	127	2.3
LRR [Pfam fs]	128	151	2.5e-05
LRR [Pfam ls]	128	151	0.00041
LRR [Pfam ls]	152	175	0.61
LRR [Pfam ls]	176	199	1.1
LRR [Pfam ls]	200	223	0.6
LRR [Pfam ls]	224	247	1.1
LRR [Pfam ls]	273	296	0.056
LRR [Pfam ls]	297	321	0.029
LRR [Pfam ls]	352	375	0.58
LRR [Pfam ls]	377	400	0.34
LRR [Pfam ls]	425	448	0.16
LRR [Pfam ls]	449	472	0.16
LRR [Pfam ls]	473	497	0.0074
LRR [Pfam ls]	520	543	0.0096
LRR [Pfam ls]	544	567	1.1
LRR [Pfam ls]	568	591	1.1
LRR [Pfam ls]	592	617	2.7
Ser/Thr pkinase [Pfam fs]	708	927	1.6e-44
Ser/Thr pkinase [Pfam ls]	708	1008	3.4e-44

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	80	103	3.5
LRR [sensitive, ls]	80	103	73
LRR [sensitive, ls]	104	127	0.11
LRR [sensitive, ls]	104	127	2.3
LRR [sensitive, ls]	128	151	2e-05
LRR [sensitive, ls]	128	151	0.00041
LRR [sensitive, ls]	152	175	0.03
LRR [sensitive, ls]	152	175	0.61
LRR [sensitive, ls]	176	199	0.052
LRR [sensitive, ls]	176	199	1.1
LRR [sensitive, ls]	200	223	0.029
LRR [sensitive, ls]	200	223	0.6
LRR [sensitive, ls]	224	247	0.052
LRR [sensitive, ls]	224	247	1.1
LRR [sensitive, ls]	273	296	0.0027
LRR [sensitive, ls]	273	296	0.056
LRR [sensitive, ls]	297	321	0.0014
LRR [sensitive, ls]	297	321	0.029
LRR [sensitive, ls]	352	375	0.028
LRR [sensitive, ls]	352	375	0.58
LRR [sensitive, ls]	377	400	0.017
LRR [sensitive, ls]	377	400	0.34
LRR [sensitive, ls]	401	424	1.2
LRR [sensitive, ls]	401	424	24
LRR [sensitive, ls]	425	448	0.0075
LRR [sensitive, ls]	425	448	0.16
LRR [sensitive, ls]	449	472	0.0079
LRR [sensitive, ls]	449	472	0.16
LRR [sensitive, ls]	473	497	0.00036
LRR [sensitive, ls]	473	497	0.0074
LRR [sensitive, ls]	520	543	0.00046
LRR [sensitive, ls]	520	543	0.0096
LRR [sensitive, ls]	544	567	0.053
LRR [sensitive, ls]	544	567	1.1
LRR [sensitive, ls]	568	591	0.055
LRR [sensitive, ls]	568	591	1.1
LRR [sensitive, ls]	592	617	0.13
LRR [sensitive, ls]	592	617	2.7

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	7	817	1e-162
CLV2 [A. thaliana]	27	607	4e-55
FLS2 [A.thaliana]	38	608	3e-90
Cf-9 [L. pimpinellifolium]	41	624	7e-60
CLV2 [A. thaliana]	78	445	4e-30
FLS2 [A.thaliana]	81	209	8e-14
Cf-9 [L. pimpinellifolium]	83	448	5e-31
Cf-9 [L. pimpinellifolium]	84	567	9e-36
CLV2 [A. thaliana]	84	518	1e-34
FLS2 [A.thaliana]	84	1006	1e-124
Cf-9 [L. pimpinellifolium]	91	638	7e-53
FLS2 [A.thaliana]	155	610	3e-70
Cf-9 [L. pimpinellifolium]	250	625	7e-29
Rpg1 [Hordeum vulgare]	697	1011	3e-27
Pto [L. esculentum]	699	1007	3e-28
Rpg1 [Hordeum vulgare]	701	1017	1e-24

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	656	675	out -> in

Report for 2085.m00105

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)