Report for 2430.m00154

 > 2430.m00154, length: 584, copies: 1 

NNLSGLIPDSIGNLAQLTEFHLDGNNFNGSIPSNLGQWRQLEKLDLSHNSFGESLPSEVFNISSLSQSLDLSHNL

FTGPIPLEIGNLINLGSISISNNRLTGEIPSTLGNCVLLEYLHMEGNLLTGSIPQSFMNLKSIKELDLSRNSLSG

KVPEFLTLLSSLQKLNLSFNDFEGPIPSNGVFGNASRAILDGNYRLCVNDPGYSLPLCRESGSQSKHKSTILKIV

IPIAVSVVILLLCLMAVLIKRRKQKPSLQQSSVNMRKISYEDIANATDGFSPTNLVGLGSFGAVYKGMLPFETNP

VAIKVFDLNKYGAPTSFNAECEALRYIRHRNLVKIITLCSTIDPNGYDFKALVFQYMPNGSLEMWLHPEDHGHGK

KRFLTLGERISLALDIAYALDYLHNQCVSPLIHCDIKPSNVLLDLEMTAYVSDFGLARFMGANSTAAPGNSTSLA

DLKGSIGYIAPEYGMGGQISTKGDVYSYGVLLLEILTGKRPTDEKFNDGLSLHDRVDAAFPHRVTEILDPNMLHN

DLDGGNSELMQSCVLPLVKVALMCSMASPKDRLGMAQVSTELQSIKQAFLELSSGGKVV

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	16	39	1.9
LRR [Pfam ls]	40	64	0.1
LRR [Pfam ls]	89	112	0.56
LRR [Pfam ls]	113	136	0.072
LRR [Pfam ls]	137	160	0.22
LRR [Pfam ls]	161	186	5.8
Ser/Thr pkinase [Pfam fs]	275	494	7.4e-44
Ser/Thr pkinase [Pfam ls]	275	535	2.2e-38

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	16	39	0.091
LRR [sensitive, ls]	16	39	1.9
LRR [sensitive, ls]	40	64	0.005
LRR [sensitive, ls]	40	64	0.1
LRR [sensitive, ls]	65	88	2.3
LRR [sensitive, ls]	65	88	48
LRR [sensitive, ls]	89	112	0.027
LRR [sensitive, ls]	89	112	0.56
LRR [sensitive, ls]	113	136	0.0035
LRR [sensitive, ls]	113	136	0.072
LRR [sensitive, ls]	137	160	0.01
LRR [sensitive, ls]	137	160	0.22
LRR [sensitive, ls]	161	186	0.28
LRR [sensitive, ls]	161	186	5.8

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Cf-9 [L. pimpinellifolium]	1	193	4e-20
Cf-9 [L. pimpinellifolium]	1	180	1e-18
Cf-9 [L. pimpinellifolium]	1	177	2e-17
Cf-9 [L. pimpinellifolium]	1	193	4e-13
CLV2 [A. thaliana]	1	189	2e-27
CLV2 [A. thaliana]	1	178	9e-26
CLV2 [A. thaliana]	1	181	5e-21
CLV2 [A. thaliana]	1	202	3e-20
CLV2 [A. thaliana]	1	177	7e-16
CLV2 [A. thaliana]	1	177	1e-13
FLS2 [A.thaliana]	1	571	6e-81
FLS2 [A.thaliana]	1	179	5e-30
FLS2 [A.thaliana]	1	179	3e-28
FLS2 [A.thaliana]	1	179	4e-25
FLS2 [A.thaliana]	1	309	1e-24
FLS2 [A.thaliana]	1	179	3e-23
FLS2 [A.thaliana]	1	177	1e-21
FLS2 [A.thaliana]	1	177	9e-21
Xa21 [O. sativa]	1	386	4e-91
Xa21 [O. sativa]	1	186	2e-26
Xa21 [O. sativa]	1	177	3e-25
Xa21 [O. sativa]	1	270	3e-19
Cf-9 [L. pimpinellifolium]	2	191	3e-19
CLV2 [A. thaliana]	2	182	3e-17
FLS2 [A.thaliana]	3	189	1e-26
Xa21 [O. sativa]	10	177	1e-18
Xa21 [O. sativa]	16	179	8e-21
Cf-9 [L. pimpinellifolium]	33	170	3e-11
FLS2 [A.thaliana]	68	177	1e-10
Rpg1 [Hordeum vulgare]	193	570	8e-27
Pto [L. esculentum]	256	568	8e-25
Rpg1 [Hordeum vulgare]	272	489	4e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	221	243	in -> out

Report for 2430.m00154

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)