Report for 2455.m00116

 > 2455.m00116, length: 606, copies: 1 

MGFHPKPCLYDMSSNKLYGQLSHRWGECAKLTTLRASNNRITGVIPSSMGKLSQLGRLDVSSNEIEGHIPPEIGN

VVSLFNLSLANNMLQGTIPKEVGSLQNLEYLDLSSNNLSGQIHGSIENCLKLRLLRLGHNRLDGSIPVKLGMLVS

LQELLDLSDNSFSGIIPSQLGALSMLEALNLSHNTLNGSIPSSFQGMISLSSLDVSYNNLEGPVPHINFLEEAPI

EWFMHNKKLCGTVKALPPCDLNQKGGQGKKFKSILLGIVGAAGMSIVFIMSLVAWQCKRKKYGEQSENGVGDAKV

FSVWNFEGGEACRQIFETTKYFNETHCIGTGGNGSVYRAQLPTGEIFAVKKIHMMEYDELIFKREIDALTRIRHR

NIVKLFGYCSAVHGKFLVYEYMDRGSLSRYLENHNIAIELDWMRRISIVKDVANALSYIHHDCFAPIVHRDITSN

NILLDQEFRACISDFGIAKVLDVEASNCTKLAGTKGYLAPELAYTTRVTEKCDVYSFGVLVFELFMGHHPGDFLL

SFSMAKESTTLKDLLDARIPLPKAETASEIFRVIMAAVQCLDPNPSRRPTMQHVTRMFSTAEGPSNPDHLHVDII

IPAYYQ

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	30	53	0.075
LRR [Pfam ls]	54	77	2.1
LRR [Pfam ls]	78	101	3.1
LRR [Pfam ls]	102	125	0.091
LRR [Pfam ls]	126	149	4.9
LRR [Pfam ls]	175	198	0.43
LRR [Pfam ls]	199	221	3.9
Ser/Thr pkinase [Pfam fs]	322	520	1.9e-49
Ser/Thr pkinase [Pfam ls]	322	583	2.2e-51
Ser/Thr pkinase [Pfam fs]	564	583	0.41

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	30	53	0.0036
LRR [sensitive, ls]	30	53	0.075
LRR [sensitive, ls]	54	77	0.1
LRR [sensitive, ls]	54	77	2.1
LRR [sensitive, ls]	78	101	0.15
LRR [sensitive, ls]	78	101	3.1
LRR [sensitive, ls]	102	125	0.0044
LRR [sensitive, ls]	102	125	0.091
LRR [sensitive, ls]	126	149	0.24
LRR [sensitive, ls]	126	149	4.9
LRR [sensitive, ls]	150	174	2.8
LRR [sensitive, ls]	150	174	58
LRR [sensitive, ls]	175	198	0.021
LRR [sensitive, ls]	175	198	0.43
LRR [sensitive, ls]	199	221	0.19
LRR [sensitive, ls]	199	221	3.9

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	3	218	3e-23
CLV2 [A. thaliana]	4	215	3e-19
CLV2 [A. thaliana]	9	190	1e-11
FLS2 [A.thaliana]	9	238	5e-29
FLS2 [A.thaliana]	9	215	9e-29
FLS2 [A.thaliana]	9	215	2e-27
Cf-9 [L. pimpinellifolium]	11	260	8e-22
Cf-9 [L. pimpinellifolium]	11	215	6e-11
CLV2 [A. thaliana]	11	215	5e-22
FLS2 [A.thaliana]	11	591	5e-78
FLS2 [A.thaliana]	11	225	6e-28
Xa21 [O. sativa]	11	215	1e-20
Cf-9 [L. pimpinellifolium]	12	252	1e-19
Cf-9 [L. pimpinellifolium]	12	275	2e-19
CLV2 [A. thaliana]	12	242	6e-23
CLV2 [A. thaliana]	12	214	1e-18
CLV2 [A. thaliana]	12	231	3e-16
FLS2 [A.thaliana]	12	241	6e-31
Xa21 [O. sativa]	12	215	1e-25
Xa21 [O. sativa]	12	215	6e-21
FLS2 [A.thaliana]	15	215	2e-31
FLS2 [A.thaliana]	15	240	1e-27
FLS2 [A.thaliana]	15	215	1e-24
Xa21 [O. sativa]	15	406	5e-44
FLS2 [A.thaliana]	16	215	1e-26
Xa21 [O. sativa]	30	215	3e-23
FLS2 [A.thaliana]	74	215	2e-11
CLV2 [A. thaliana]	79	212	2e-11
Pto [L. esculentum]	317	579	3e-28
Rpg1 [Hordeum vulgare]	319	584	3e-33
Rpg1 [Hordeum vulgare]	319	579	5e-28

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	258	280	out -> in

Report for 2455.m00116

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)