Report for 2455.m00119

 > 2455.m00119, length: 856, copies: 1 

MVSLFNLSLANNLLHGNIPEELGSLQNLEYLDLSLNNLSGPIQGSIENCLKLQSLRLGHNHLGGSIPIKLGMLTY

LQELLDLSDNSFAGIIPSQLSGLNMLEALNLSHNTLNGSIPPSFKGMISLSSMDVSYNNLEGPVPHIKFLEEAPV

EWFVHNKHLCGTVKALPPCNLIQKGGKGKKFRPILLGVAAAAGISVLFITALVTWQRRKMKSVEQSENGAGNTKV

FSVWNFDGGDVCKQSFEATENFNGTHCIGMGGNGSVYRAQLPTGEIFAVKKIHMTEDDELIFKREVDALMSIRHR

NIVKLFGYCSAVHVKFLVYEYMDRGSLSRYLENHNTAIELDWMRRINIVKDVDNALSYIHHDCFAPIVHRDITSN

NILLDLEFRACISDFGIAKILDVEASNCTKLAGTKGYLAPELAYTTRVTEKCDVYSFGVLVFELFMGCHPPLPTV

AAAAAAGMPPRRRRRVRPPLPPSPPLLSSTTATPPPTPPVGTPKSEAADRRPPPARRRLPLVSAAAVEEEDGEWH

PLPLSAADLSLPLTLPTGQTFLWRRTSLSPLRFTGAVGPHLVSLSHLPSSDGRLAFLLHNNGGSSSSSVPAAARA

ALSDYLNAAVPLADLWRRFAAADARFAEVSARLGGGGARVLRQDPVECVFQFLCSSNNNIARIEKMVWALAGYGE

RLGEVGGYQFHQFPTIERLARVSEQELRDAGFGYRAKYIVGTAKILQAKPGGGEKWLASLRTRELPEVIEALCTL

PGVGPKVAACVALFSLDQNHAIPVDTHVWKVATQYLMPELAGKSLTPKLSVAVADAFVAKFGNYAGWAQNVLFIG

QLSAQKLMVAETTNTSTKPTKRKRSGNNVKT

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	27	50	0.31
LRR [Pfam ls]	51	74	0.82
LRR [Pfam ls]	100	123	0.21
Ser/Thr pkinase [Pfam fs]	247	448	4.2e-46
Ser/Thr pkinase [Pfam ls]	247	512	2.2e-38

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	3	26	0.44
LRR [sensitive, ls]	3	26	9.2
LRR [sensitive, ls]	27	50	0.015
LRR [sensitive, ls]	27	50	0.31
LRR [sensitive, ls]	51	74	0.04
LRR [sensitive, ls]	51	74	0.82
LRR [sensitive, ls]	76	99	4.4
LRR [sensitive, ls]	76	99	91
LRR [sensitive, ls]	100	123	0.01
LRR [sensitive, ls]	100	123	0.21
LRR [sensitive, ls]	124	146	0.64
LRR [sensitive, ls]	124	146	13

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Cf-9 [L. pimpinellifolium]	1	143	2e-15
FLS2 [A.thaliana]	1	140	2e-16
FLS2 [A.thaliana]	1	166	1e-19
FLS2 [A.thaliana]	1	150	1e-18
FLS2 [A.thaliana]	1	140	1e-13
Xa21 [O. sativa]	1	331	8e-34
Xa21 [O. sativa]	1	163	1e-15
Xa21 [O. sativa]	1	140	3e-12
CLV2 [A. thaliana]	2	152	1e-16
FLS2 [A.thaliana]	2	140	4e-16
Xa21 [O. sativa]	2	140	2e-12
Cf-9 [L. pimpinellifolium]	3	171	3e-12
Cf-9 [L. pimpinellifolium]	3	179	5e-11
CLV2 [A. thaliana]	3	140	2e-18
CLV2 [A. thaliana]	3	140	4e-17
CLV2 [A. thaliana]	3	140	2e-11
FLS2 [A.thaliana]	3	140	2e-17
Xa21 [O. sativa]	3	173	6e-22
FLS2 [A.thaliana]	4	140	3e-13
Xa21 [O. sativa]	4	140	1e-18
Cf-9 [L. pimpinellifolium]	7	163	6e-14
FLS2 [A.thaliana]	7	445	5e-61
FLS2 [A.thaliana]	7	174	1e-17
FLS2 [A.thaliana]	7	140	3e-16
FLS2 [A.thaliana]	7	166	6e-14
Xa21 [O. sativa]	7	140	4e-19
Pto [L. esculentum]	242	439	1e-26
Rpg1 [Hordeum vulgare]	244	442	3e-29
Rpg1 [Hordeum vulgare]	244	442	2e-24

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
HhH-GPD superfamily base excision DNA repair	650	797	1.8e-11
Helix-hairpin-helix motif	735	764	0.0067

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	183	205	in -> out

Report for 2455.m00119

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)