Report for 2963.m00128

 > 2963.m00128, length: 1142, copies: 1 

MSQHYTKTICIAVVLVAVLFSLSSSAAAGSGAAVSVQLEALLEFKNGVADDPLGVLAGWRVGKSGDGAVRGGALP

RHCNWTGVACDGAGQVTSIQLPESKLRGALSPFLGNISTLQVIDLTSNAFAGGIPPQLGRLGELEQLVVSSNYFA

GGIPSSLCNCSAMWALALNVNNLTGAIPSCIGDLSNLEIFEAYLNNLDGELPPSMAKLKGIMVVDLSCNQLSGSI

PPEIGDLSNLQILQLYENRFSGHIPRELGRCKNLTLLNIFSNGFTGEIPGELGELTNLEVMRLYKNALTSEIPRS

LRRCVSLLNLDLSMNQLAGPIPPELGELPSLQRLSLHANRLAGTVPASLTNLVNLTILELSENHLSGPLPASIGS

LRNLRRLIVQNNSLSGQIPASISNCTQLANASMSFNLFSGPLPAGLGRLQSLMFLSLGQNSLAGDIPDDLFDCGQ

LQKLDLSENSFTGGLSRRVGQLGNLTVLQLQGNALSGEIPEEIGNLTKLISLKLGRNRFAGHVPASISNMSSLQL

LDLGHNRLDGMFPAEVFELRQLTILGAGSNRFAGPIPDAVANLRSLSFLDLSSNMLNGTVPAALGRLDQLLTLDL

SHNRLAGAIPRRGDREHEQRADLSGGVPATLAGCKNLYSLDLSGNSLTGELPANLFPQLDLLTTLNISGNDLDGE

IPADIAALKHIQTLDVSRNAFAGAIPPALANLTALRSLNLSSNTFEGPVPDGGVFGNLTMSSLQGNAGLCGGKLL

VPCHGHAAGNKRVFSRTGLVILVVLIALSTLLLLMVATILLIGYRRYRRKRRAAGIAGDSSEAAVVVPELRRFSY

GQLAAATNSFDQGNVIGSSNLSTVYKGVLAGDADGGMVVAVKRLNLEQFPSKSDKCFFTELATLSRLRHKNLARV

VGYAWEAGKIKALVLDYMVNGDLDGAIHGGAAAPPTAPSRWTVRERLRVCVSVAHGLVYLHSGYDFPVVHCDVKP

SNVLLDGDWEARVSDFGTARMLGVHLPAAADAAAQSTATSSAFRGTVGYMAPEFAYMRTVSTKVDVFSFGVLAME

LFTGRRPTGTIEEDGVPLTLQQLVDNAVSRGLDGVHAVLDPRMKVATEADLSTAADVLAVALSCAAFEPADRPDM

GAVLSSLLKMSKLVGED

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	114	137	2.9
LRR [Pfam ls]	210	233	2.1
LRR [Pfam ls]	234	257	0.2
LRR [Pfam ls]	258	281	0.24
LRR [Pfam ls]	282	305	7.5
LRR [Pfam ls]	330	353	2.8
LRR [Pfam ls]	354	377	0.095
LRR [Pfam ls]	378	401	0.11
LRR [Pfam ls]	450	473	2.3
LRR [Pfam ls]	474	497	0.0026
LRR [Pfam ls]	522	545	0.88
LRR [Pfam ls]	570	593	2.3
LRR [Pfam ls]	636	660	0.002
LRR [Pfam ls]	661	684	0.23
LRR [Pfam ls]	685	708	0.17
LRR [Pfam ls]	709	734	0.7
Ser/Thr pkinase [Pfam fs]	835	1058	1.4e-34
Ser/Thr pkinase [Pfam ls]	835	1134	4.5e-35

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	114	137	0.14
LRR [sensitive, ls]	114	137	2.9
LRR [sensitive, ls]	138	161	0.61
LRR [sensitive, ls]	138	161	12
LRR [sensitive, ls]	186	209	2.6
LRR [sensitive, ls]	186	209	52
LRR [sensitive, ls]	210	233	0.1
LRR [sensitive, ls]	210	233	2.1
LRR [sensitive, ls]	234	257	0.01
LRR [sensitive, ls]	234	257	0.2
LRR [sensitive, ls]	258	281	0.012
LRR [sensitive, ls]	258	281	0.24
LRR [sensitive, ls]	282	305	0.37
LRR [sensitive, ls]	282	305	7.5
LRR [sensitive, ls]	306	329	0.81
LRR [sensitive, ls]	306	329	16
LRR [sensitive, ls]	330	353	0.14
LRR [sensitive, ls]	330	353	2.8
LRR [sensitive, ls]	354	377	0.0047
LRR [sensitive, ls]	354	377	0.095
LRR [sensitive, ls]	378	401	0.0055
LRR [sensitive, ls]	378	401	0.11
LRR [sensitive, ls]	426	449	1.6
LRR [sensitive, ls]	426	449	33
LRR [sensitive, ls]	450	473	0.11
LRR [sensitive, ls]	450	473	2.3
LRR [sensitive, ls]	474	497	0.00013
LRR [sensitive, ls]	474	497	0.0026
LRR [sensitive, ls]	498	521	0.85
LRR [sensitive, ls]	498	521	17
LRR [sensitive, ls]	522	545	0.044
LRR [sensitive, ls]	522	545	0.88
LRR [sensitive, ls]	546	569	0.87
LRR [sensitive, ls]	546	569	18
LRR [sensitive, ls]	570	593	0.12
LRR [sensitive, ls]	570	593	2.3
LRR [sensitive, ls]	594	618	1.1
LRR [sensitive, ls]	594	618	23
LRR [sensitive, ls]	636	660	9.8e-05
LRR [sensitive, ls]	636	660	0.002
LRR [sensitive, ls]	661	684	0.012
LRR [sensitive, ls]	661	684	0.23
LRR [sensitive, ls]	685	708	0.0086
LRR [sensitive, ls]	685	708	0.17
LRR [sensitive, ls]	709	734	0.035
LRR [sensitive, ls]	709	734	0.7

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	17	654	9e-89
FLS2 [A.thaliana]	37	1135	0
Cf-9 [L. pimpinellifolium]	78	755	1e-73
CLV2 [A. thaliana]	79	676	8e-70
CLV2 [A. thaliana]	79	470	2e-40
CLV2 [A. thaliana]	196	745	3e-67
Xa21 [O. sativa]	211	928	1e-103
CLV2 [A. thaliana]	307	725	1e-57
Xa21 [O. sativa]	610	733	5e-12
Pto [L. esculentum]	819	1132	4e-29
Rpg1 [Hordeum vulgare]	821	1132	4e-28
Rpg1 [Hordeum vulgare]	823	1135	4e-22

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	12	34	in -> out
putative TM domain	770	792	out -> in

Report for 2963.m00128

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)