Report for 2972.m00172

 > 2972.m00172, length: 339, copies: 1 

MARAVVLLLLAVAALSCTSAAASGPSCHADDSAALLAVKAAFNNASFEYWTPEFPCCDWYGVDCGDDYLPSDDRV

INLAITRDDNITGTIPGDAIAGLTRLRYITFFKVPGITGPIPAALANISGLRVLTISHTAVSGPIPSFIGDKFTD

LGILDLSFNSLTGAIPASLAKPPKLNSIDLSRNRLTGSIPRLLLSKAGQQAFLTMSHNNLTGRIPAEFGAVNFVQ

IDLSRNQLTGDASMLFGSGKKELVSAYLSRNALSFNMSQLQLPEELNFLDVSHNSIYGSIPAQMANMTDMQLLNV

SYNRLCGVVPTGGNMPSFDAYCFQHNKCLCGAPLSHCTH

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	150	173	3.1
LRR [Pfam ls]	174	198	0.25
LRR [Pfam ls]	270	293	4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	74	99	2.5
LRR [sensitive, ls]	74	99	66
LRR [sensitive, ls]	125	147	0.98
LRR [sensitive, ls]	125	147	26
LRR [sensitive, ls]	150	173	0.12
LRR [sensitive, ls]	150	173	3.1
LRR [sensitive, ls]	174	198	0.0094
LRR [sensitive, ls]	174	198	0.25
LRR [sensitive, ls]	222	245	0.76
LRR [sensitive, ls]	222	245	21
LRR [sensitive, ls]	270	293	0.15
LRR [sensitive, ls]	270	293	4
LRR [sensitive, ls]	294	316	0.55
LRR [sensitive, ls]	294	316	15

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	1	303	5e-12
Xa21 [O. sativa]	7	310	2e-17
FLS2 [A.thaliana]	57	309	2e-15
Xa21 [O. sativa]	75	331	4e-28
FLS2 [A.thaliana]	76	338	6e-28
FLS2 [A.thaliana]	76	312	9e-19
FLS2 [A.thaliana]	84	310	2e-18
Xa21 [O. sativa]	84	335	3e-16
CLV2 [A. thaliana]	92	326	2e-17
Cf-9 [L. pimpinellifolium]	112	335	9e-15
Cf-9 [L. pimpinellifolium]	112	318	5e-14
CLV2 [A. thaliana]	112	337	2e-13
FLS2 [A.thaliana]	112	311	3e-17
CLV2 [A. thaliana]	113	310	1e-14
Xa21 [O. sativa]	119	332	2e-11
CLV2 [A. thaliana]	126	310	3e-15
CLV2 [A. thaliana]	129	311	5e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2972.m00172

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)