Report for 3051.m00122

 > 3051.m00122, length: 706, copies: 2 

MASNLFLLLFFLVVSYAPFLAFSSEPLNPEVEALIAIRQGLVDPHGVLNNWDEDSVDPCSWAMVTCSAHNLVIGL

GAPSQGLSGTLSGRIANLTNLEQVLLQNNNITGRLPPELGALPRLQTLDLSNNRFSGRVPDTLGRLSTLRYLRLN

NNSLSGAFPSSLAKIPQLSFLDLSYNNLTGPVPHFPTRTFNVVGNPMICGSSSGSHAGNANAAECATVVAPVTVP

FPLDSTPSSSSRAAAAAVGRSKGGGGAARLPIGVGTSLGASALVLLAVSCFLWRRRRRHRCLLSGPSSVLGILEK

GRDVEDGGGGEVMARLGNVRQFGLRELHAATDGFSARNILGKGGFGDVYRGRLSDGTVVAVKRLKDPTASGEAQF

RTEVEMISLAVHRHLLRLVGFCAAASGERLLVYPYMPNGSVASRLRGKPPLDWQTRKRIAVGTARGLLYLHEQCD

PKIIHRDVKAANVLLDECHEAVVGDFGLAKLLDHGDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLE

LVTGQRALEVGKGSGVIQHQKGVMLDWVRKVHQEKLHDLLVDQDLGPHYDRIEVAEMVQVALLCTQFQPSHRPRM

SEVVRMLEGDGLAEKWEANHRPAAMAAAAAPHELGYDHRNDSNGSVFFNDFHDNDSSLSSDEVRSIDMVEEMELS

GPSVMVMAQAIDFLGSRLGQWVIHEESVWYN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	95	118	0.026
LRR [Pfam ls]	119	142	0.0099
LRR [Pfam ls]	143	166	0.25
LRR [Pfam ls]	167	186	0.38
Ser/Thr pkinase [Pfam fs]	334	529	9.7e-50
Ser/Thr pkinase [Pfam ls]	334	609	6.2e-45

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	95	118	0.00097
LRR [sensitive, ls]	95	118	0.026
LRR [sensitive, ls]	119	142	0.00037
LRR [sensitive, ls]	119	142	0.0099
LRR [sensitive, ls]	143	166	0.0093
LRR [sensitive, ls]	143	166	0.25
LRR [sensitive, ls]	167	186	0.014
LRR [sensitive, ls]	167	186	0.38

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	1	183	6e-26
CLV2 [A. thaliana]	9	185	2e-11
Xa21 [O. sativa]	33	183	8e-19
FLS2 [A.thaliana]	66	183	4e-12
FLS2 [A.thaliana]	67	607	4e-53
CLV2 [A. thaliana]	72	183	7e-11
Xa21 [O. sativa]	72	183	7e-14
Cf-9 [L. pimpinellifolium]	75	182	2e-12
FLS2 [A.thaliana]	75	183	8e-14
FLS2 [A.thaliana]	75	183	2e-12
FLS2 [A.thaliana]	75	183	5e-12
Xa21 [O. sativa]	75	193	2e-14
FLS2 [A.thaliana]	77	183	2e-11
FLS2 [A.thaliana]	79	183	2e-15
CLV2 [A. thaliana]	81	194	9e-11
CLV2 [A. thaliana]	82	183	3e-13
CLV2 [A. thaliana]	82	192	9e-13
FLS2 [A.thaliana]	82	182	1e-13
FLS2 [A.thaliana]	82	192	6e-12
FLS2 [A.thaliana]	82	183	5e-11
Xa21 [O. sativa]	82	183	5e-13
CLV2 [A. thaliana]	83	213	8e-12
FLS2 [A.thaliana]	83	183	1e-11
Xa21 [O. sativa]	84	416	5e-23
Xa21 [O. sativa]	84	183	9e-12
Xa21 [O. sativa]	84	183	1e-11
Rpg1 [Hordeum vulgare]	316	615	1e-37
Pto [L. esculentum]	321	608	1e-44
Rpg1 [Hordeum vulgare]	321	614	7e-26

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	5	22	in -> out

Report for 3051.m00122

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)