Report for 33.m00082

 > 33.m00082, length: 250, copies: 1 

MAAKAPLVLRLCLFLCISLSLLLLSSPQRVTSLSLDADVDDHYYHYDGDEDDDNYYHDDDDDVFSGRPVRRIYDG

DDDENYYRNDEVDFSSRPARRLYDGGAVMPEKYNVLNGNSSNSSSGSAFCRLLSLQILDLSNNKLTGKLPDCWWN

LQSLQFMDLSHNRFSALKGCQTLVTLDIGNNNFFGGIPPWIGKGLSSLKILSLRSNNFTGNSLSECIPDELTNLQ

GLRFLNLSRNNLSSHSSKPCWYIYP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	129	152	0.0033
LRR [Pfam ls]	172	196	0.5
LRR [Pfam ls]	197	225	2.1

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	129	152	0.00014
LRR [sensitive, ls]	129	152	0.0033
LRR [sensitive, ls]	172	196	0.022
LRR [sensitive, ls]	172	196	0.5
LRR [sensitive, ls]	197	225	0.091
LRR [sensitive, ls]	197	225	2.1
LRR [sensitive, ls]	226	246	1.4
LRR [sensitive, ls]	226	246	34

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	110	240	2e-13
CLV2 [A. thaliana]	111	238	1e-11
FLS2 [A.thaliana]	121	240	2e-12
FLS2 [A.thaliana]	130	241	1e-10

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	7	24	in -> out

Report for 33.m00082

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)