Report for 33.m00105

 > 33.m00105, length: 982, copies: 1 

MAPVVHPFFLLPLLVAIASIPGSVNAAASSQQTDALLAWKSSLADPVALSGWTRASPVCTWRGVGCDAAGGGRVT

KLRLRGLGLGGGLHTLELDFAAFPALTELDLNGNSFAGDIPAGISQLRSLASLDLGDNGFNGSIPPQIGHLSGLV

DLCLYNNNLVGAIPHQLSRLPKIAHFDLGANYLTDQDFAKFSPMPTVTFMSLYDNSINGSFPDFILKSGNITYLD

LSQNTLFGLMPDTLPEKLPNLMYLNLSNNEFSGRIPASLRRLTKLQDLLIAANNLTGGVPEFLGSMSQLRILELG

DNQLGGAIPPVLGQLQMLQRLKIKNAGLVSTLPPELGNLKNLTFLEISVNHLSGGLPPAFAGMCAMREFGLEMNG

LTGEIPSVLFTSWPELISFQVQYNFFTGRIPKEVGMARKLKILYLFSNNLCGSIPAELGDLENLEELDLSNNLLT

GPIPRSIGNLKQLTALALFFNDLTGVIPPEIGNMTALQRLDVNTNRLQGELPATISSLRNLQYLSVFNNYMSGTI

PPDLGKGIALQHVSFTNNSFSGELPRHICDGFALERFTANHNNFSGTLPPCLKNCTSLYRVRLDGNHFTGDISDA

FGIHPSLEYLDISGSKLTGRLSSDWGQCTNLTYLSINGNSISGNLDSTFCTLSSLQFLDLSNNRFNGELPRCWWE

LQALLFMDVSGNGFSGELPASRSPELPLQSLHLANNSFSVVFPATIRNCRALVTLDMWSNKFFGKIPSWIGTSLP

VLRILLLRSNNFSGEIPTELSQLSQLQLLDLASNGLTGFIPTTFANLSSMKQAKTFPTIGTFNWKSAPSRGYDYP

FPLDQSRDRFNILWKGHEETFQGTAMLMTGIDLSSNSLYGEIPKELTYLQGLRKREGKGDSSRVEDAGHLNFGRR

PGLRCGEFSRIGGGGEVRVSPGLRMATAVEEAKCCAALGRSDSVKEIAGEVDGARAPPRHGAASACDRGGDDAMR

RRGSCRR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	100	123	0.18
LRR [Pfam ls]	124	147	0.14
LRR [Pfam ls]	148	171	1.8
LRR [Pfam ls]	220	240	0.84
LRR [Pfam ls]	245	268	0.031
LRR [Pfam ls]	293	316	0.065
LRR [Pfam ls]	341	364	0.083
LRR [Pfam ls]	414	437	0.34
LRR [Pfam fs]	438	461	6.9e-06
LRR [Pfam ls]	438	461	0.0001
LRR [Pfam ls]	462	485	2.8
LRR [Pfam ls]	486	509	2.8
LRR [Pfam ls]	510	534	0.48
LRR [Pfam ls]	606	629	0.12
LRR [Pfam ls]	630	653	0.12
LRR [Pfam ls]	654	677	0.31
LRR [Pfam ls]	751	774	3.8
LRR [Pfam ls]	775	798	0.0025

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	73	99	1.8
LRR [sensitive, ls]	73	99	41
LRR [sensitive, ls]	100	123	0.0077
LRR [sensitive, ls]	100	123	0.18
LRR [sensitive, ls]	124	147	0.006
LRR [sensitive, ls]	124	147	0.14
LRR [sensitive, ls]	148	171	0.077
LRR [sensitive, ls]	148	171	1.8
LRR [sensitive, ls]	172	195	2.3
LRR [sensitive, ls]	172	195	55
LRR [sensitive, ls]	196	217	2.2
LRR [sensitive, ls]	196	217	52
LRR [sensitive, ls]	220	240	0.036
LRR [sensitive, ls]	220	240	0.84
LRR [sensitive, ls]	245	268	0.0013
LRR [sensitive, ls]	245	268	0.031
LRR [sensitive, ls]	269	292	0.26
LRR [sensitive, ls]	269	292	6
LRR [sensitive, ls]	293	316	0.0028
LRR [sensitive, ls]	293	316	0.065
LRR [sensitive, ls]	317	340	0.58
LRR [sensitive, ls]	317	340	13
LRR [sensitive, ls]	341	364	0.0035
LRR [sensitive, ls]	341	364	0.083
LRR [sensitive, ls]	365	389	3.2
LRR [sensitive, ls]	365	389	76
LRR [sensitive, ls]	414	437	0.015
LRR [sensitive, ls]	414	437	0.34
LRR [sensitive, ls]	438	461	4.5e-06
LRR [sensitive, ls]	438	461	0.0001
LRR [sensitive, ls]	462	485	0.12
LRR [sensitive, ls]	462	485	2.8
LRR [sensitive, ls]	486	509	0.12
LRR [sensitive, ls]	486	509	2.8
LRR [sensitive, ls]	510	534	0.02
LRR [sensitive, ls]	510	534	0.48
LRR [sensitive, ls]	558	581	0.34
LRR [sensitive, ls]	558	581	8
LRR [sensitive, ls]	582	605	0.53
LRR [sensitive, ls]	582	605	12
LRR [sensitive, ls]	606	629	0.0052
LRR [sensitive, ls]	606	629	0.12
LRR [sensitive, ls]	630	653	0.0051
LRR [sensitive, ls]	630	653	0.12
LRR [sensitive, ls]	654	677	0.013
LRR [sensitive, ls]	654	677	0.31
LRR [sensitive, ls]	678	699	3.6
LRR [sensitive, ls]	678	699	84
LRR [sensitive, ls]	702	725	0.46
LRR [sensitive, ls]	702	725	11
LRR [sensitive, ls]	726	750	1.2
LRR [sensitive, ls]	726	750	27
LRR [sensitive, ls]	751	774	0.16
LRR [sensitive, ls]	751	774	3.8
LRR [sensitive, ls]	775	798	0.00011
LRR [sensitive, ls]	775	798	0.0025
LRR [sensitive, ls]	852	875	1
LRR [sensitive, ls]	852	875	24

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	31	714	6e-59
FLS2 [A.thaliana]	32	804	1e-100
Xa21 [O. sativa]	35	574	6e-71
Cf-9 [L. pimpinellifolium]	52	801	2e-57
Cf-9 [L. pimpinellifolium]	73	547	2e-41
CLV2 [A. thaliana]	73	467	4e-27
FLS2 [A.thaliana]	74	645	1e-74
CLV2 [A. thaliana]	90	532	3e-35
CLV2 [A. thaliana]	91	453	1e-22
Cf-9 [L. pimpinellifolium]	95	574	5e-40
Cf-9 [L. pimpinellifolium]	101	697	6e-40
CLV2 [A. thaliana]	101	603	3e-39
FLS2 [A.thaliana]	101	702	2e-76
Cf-9 [L. pimpinellifolium]	218	921	2e-53
Xa21 [O. sativa]	221	713	6e-74
CLV2 [A. thaliana]	246	790	3e-55
FLS2 [A.thaliana]	279	875	1e-68
Xa21 [O. sativa]	320	868	2e-58
CLV2 [A. thaliana]	462	878	5e-30
CLV2 [A. thaliana]	513	878	9e-18

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 33.m00105

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)