Report for 3357.m00148

 > 3357.m00148, length: 325, copies: 1 

MAAAAAAPRFLPVRPLFLLLLLLVLAGVASGKTVKRDVKALNEIKSSLGWRVVYSWVGDDPCGHGDLPPWSGVTC

SQQGDYRVVTELEVYAVSIVGPFPTAVTNLLDLKRFNPLNHVNNDYSNYRDLHNNKLTGPIPPQIGRLKHLRILN

LRWNKLQDVLPPEIGELKKLTHLYLSFNNFKGEIPVELANLPELRYLYLHENRFTGRIPPELGTLKNLRHLDVGN

NHLIGTLRDLIGNGNGFPSLRNLYLNNNDLTGVLPDQIANLTNLEILYLDNNNFIGRIPEGLYKHPFLKELYIEG

NQFRPGSKSKGTHKVLELPDADILV

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	145	168	0.1
LRR [Pfam ls]	169	192	0.0026
LRR [Pfam ls]	193	216	0.011
LRR [Pfam ls]	244	267	0.019
LRR [Pfam ls]	268	291	0.47

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	145	168	0.0033
LRR [sensitive, ls]	145	168	0.1
LRR [sensitive, ls]	169	192	8.2e-05
LRR [sensitive, ls]	169	192	0.0026
LRR [sensitive, ls]	193	216	0.00034
LRR [sensitive, ls]	193	216	0.011
LRR [sensitive, ls]	217	239	0.29
LRR [sensitive, ls]	217	239	8.9
LRR [sensitive, ls]	244	267	0.00061
LRR [sensitive, ls]	244	267	0.019
LRR [sensitive, ls]	268	291	0.015
LRR [sensitive, ls]	268	291	0.47

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	14	318	3e-21
Xa21 [O. sativa]	37	303	5e-24
FLS2 [A.thaliana]	65	301	1e-23
Xa21 [O. sativa]	71	302	8e-18
Xa21 [O. sativa]	79	261	3e-13
Xa21 [O. sativa]	84	303	8e-24
Xa21 [O. sativa]	84	315	1e-20
Cf-9 [L. pimpinellifolium]	86	287	2e-11
Cf-9 [L. pimpinellifolium]	87	311	1e-16
CLV2 [A. thaliana]	87	303	1e-18
FLS2 [A.thaliana]	87	287	6e-23
FLS2 [A.thaliana]	87	320	8e-22
Cf-9 [L. pimpinellifolium]	90	303	5e-16
CLV2 [A. thaliana]	93	302	5e-17
CLV2 [A. thaliana]	93	301	3e-11
FLS2 [A.thaliana]	94	301	2e-22
Cf-9 [L. pimpinellifolium]	98	285	1e-12
Cf-9 [L. pimpinellifolium]	113	286	4e-13
CLV2 [A. thaliana]	126	303	1e-20
FLS2 [A.thaliana]	126	287	3e-24
FLS2 [A.thaliana]	129	303	1e-21
CLV2 [A. thaliana]	132	303	6e-14
CLV2 [A. thaliana]	149	303	1e-10

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	10	29	out -> in

Report for 3357.m00148

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)