Report for 3468.m00196

 > 3468.m00196, length: 1162, copies: 1 

MAALLVLVVLVVLGGGGAAGDDVAALLEFKKGISDRGRDPVLGSWSPPATPDAGGGGGGCPSGWRGVVCDGGAVV

GVPLDGLGLAGELKLVTLSGMRALQNLSLAGNAFSGRLPPGIGYLSSLRHLDLSGNRFYGPIPGRLADLSGLVHL

NLSHNNFSSGFPTDGIRQLQNLRRIDLRSNSFWGNAGDLLAELRNAEYIDLSDNLFTGAVDLELESLSSIGNTVK

YLNLSHNKLQGGFFRNETVGAFKNLEVLDLSNSGIAGMVPQIDAWFSLAVFRVAGNALSGVMPEAMLQNSMRLVE

VDLSRNGFSGSVPVVNSTTLKLLNLSSNTFSGSLPSTVGKCSSVDLSGNQLSGELAILRAWDGTVETIDLSSNKL

EGSYPNDASQFQNLVSLKLRNNLLSGSIPSVLGTYQKLQFLDLSLNALGGPVLPFFFLSPTLTVLNLSGNNFTGT

IPFQSTHSTESIALIQPVLRIVDLSSNSLSGPLPPDISNLQRVEFLTLAMNELSGEIPSEISKLQGLEYLDLSHN

HFTGRIPDMPQASLKIFNVSYNDLQGTVPKSVEKFPITCFRPGNDLLVFPDGLPAGNYDDTGVAQSQSSHGHKAG

VRVALIVGCIGAALLVIFIALAIYVVRSQELCGRNGFRGQITIRDLKLGRLSRPNLFKPPKDNVIPTKTSFSNDH

LLTAAARSMSAQKELLAEAAVEYGYADPKEVTEPSSSGMAETSAAVPAMEPSPRVVLPTSPHFIDSRFHEEPVAF

EVYSPDRLVGELIFLDSTLVFTAEDLSRAPAEVLGRSSHGTTYKAALQSGHVLTVKWLRVGLVKHKKDFTKEIKR

IGTIRHPNIISWRAFYWGPKEQERLIISDYVNGDSLALYLYESTPRRYSRLSVSQRLKIAIDLARCLQFLHHEKG

LPHGNLKPTNIFLTGPDLSPKLVDYGLHRFMTPSGTAEQILNLGALGYRAPELANTAKPMPSFKADVYAFGVIVM

EMLTRKSAGDIISGQSGAVDLTDWVQMCNREGRGTDCFDRDITGLEESPRVMDELLAISLRCILPVNERPNMKTP

SMFAVERQALAMIPQPQAASSTPPSWPLIGIVSDAEPGGRRRSRQRLAATGGWAQAGSGPPGRERCEHVGEGPRF

GYQTSIWGQSFGCRSREHMGHGAIMIFSPHSLTVVLV

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	98	121	1.8
LRR [Pfam ls]	122	145	0.048
LRR [Pfam ls]	146	170	0.045
LRR [Pfam ls]	171	194	0.88
LRR [Pfam ls]	223	248	2.1
LRR [Pfam ls]	249	271	6.8
LRR [Pfam ls]	319	342	1.3
LRR [Pfam ls]	388	408	2
LRR [Pfam ls]	436	460	0.068
LRR [Pfam ls]	468	491	0.56
LRR [Pfam ls]	516	535	0.67
LRR [Pfam ls]	538	561	5.7
Ser/Thr pkinase [Pfam ls]	778	1061	6.7e-13
Ser/Thr pkinase [Pfam fs]	805	980	2.4e-18

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	98	121	0.089
LRR [sensitive, ls]	98	121	1.8
LRR [sensitive, ls]	122	145	0.0023
LRR [sensitive, ls]	122	145	0.048
LRR [sensitive, ls]	146	170	0.0022
LRR [sensitive, ls]	146	170	0.045
LRR [sensitive, ls]	171	194	0.043
LRR [sensitive, ls]	171	194	0.88
LRR [sensitive, ls]	195	218	0.41
LRR [sensitive, ls]	195	218	8.5
LRR [sensitive, ls]	223	248	0.099
LRR [sensitive, ls]	223	248	2.1
LRR [sensitive, ls]	249	271	0.33
LRR [sensitive, ls]	249	271	6.8
LRR [sensitive, ls]	272	296	4
LRR [sensitive, ls]	272	296	83
LRR [sensitive, ls]	297	317	0.89
LRR [sensitive, ls]	297	317	18
LRR [sensitive, ls]	319	342	0.061
LRR [sensitive, ls]	319	342	1.3
LRR [sensitive, ls]	364	387	0.53
LRR [sensitive, ls]	364	387	11
LRR [sensitive, ls]	388	408	0.098
LRR [sensitive, ls]	388	408	2
LRR [sensitive, ls]	412	435	0.86
LRR [sensitive, ls]	412	435	18
LRR [sensitive, ls]	436	460	0.0033
LRR [sensitive, ls]	436	460	0.068
LRR [sensitive, ls]	468	491	0.027
LRR [sensitive, ls]	468	491	0.56
LRR [sensitive, ls]	492	515	1.1
LRR [sensitive, ls]	492	515	22
LRR [sensitive, ls]	516	535	0.033
LRR [sensitive, ls]	516	535	0.67
LRR [sensitive, ls]	538	561	0.28
LRR [sensitive, ls]	538	561	5.7

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	14	554	2e-46
CLV2 [A. thaliana]	22	533	1e-48
FLS2 [A.thaliana]	22	557	1e-49
Cf-9 [L. pimpinellifolium]	64	578	4e-33
Cf-9 [L. pimpinellifolium]	68	397	5e-14
FLS2 [A.thaliana]	68	559	1e-46
CLV2 [A. thaliana]	84	289	5e-13
FLS2 [A.thaliana]	84	262	5e-14
Xa21 [O. sativa]	84	466	1e-29
Cf-9 [L. pimpinellifolium]	92	619	9e-39
FLS2 [A.thaliana]	92	656	2e-50
Xa21 [O. sativa]	92	540	1e-34
CLV2 [A. thaliana]	98	533	3e-36
CLV2 [A. thaliana]	99	561	2e-40
Cf-9 [L. pimpinellifolium]	216	557	7e-34
CLV2 [A. thaliana]	222	558	2e-33
FLS2 [A.thaliana]	765	1008	8e-17
Pto [L. esculentum]	771	1047	4e-15
Rpg1 [Hordeum vulgare]	783	981	1e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	422	444	out -> in
putative TM domain	603	625	in -> out

Report for 3468.m00196

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)