Report for 3908.m00149

 > 3908.m00149, length: 397, copies: 1 

MAESLLLPVVRGVVGKAAGALVQSVTRMCGVDGDRHKLERQLLAVQCKLSDAEAKSETSPAVKRWMKDLKAVAYE

ADDVLDDFHYEALRRDAQIGDSTTDKVLGYFTPHSPLLFRVAMSKKLNSVLKKINELVEEMNKFGLVERADQATV

HVIHPQTHSGLDSLMEIVGRDDDKEMVVNLLLEQRSKRMVEVLSIVGMGGLGKTTLAKMVYNDTRVQQRFELPMW

LCVSDDFNVVSLVRSIIELATRGNCTLPDRIELLRSRLHEVVGRKRYLLVLDDVWNEEEHKWEELRPLLHSAGAP

GSVVLVTTRSQRVASIMGTVPAHTLSYLNHDDSWELFRKKAFSKEEEQQPEFAEIGNRIVKKCKGLPLALKTMGG

LMSSKKRIQEWEAIAGSKSWED

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	152	397	5.1e-36
NB-ARC [Pfam fs]	165	396	1.8e-63

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	14	396	6e-36
I2 [L. esculentum]	37	396	4e-57
Pib [Oryza sativa].	49	316	3e-12
Mla1 [Hordeum vulgare].	63	392	5e-27
Xa1 [Oryza sativa]	115	396	2e-35
RPS2 [A. thaliana]	118	386	3e-20
L6 [L. usitatissimum]	126	387	2e-11
Pib [Oryza sativa].	156	389	2e-25
N [N. glutinosa]	161	388	4e-13
M [L. usitatissimum]	166	387	2e-13

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	37	58
putative coiled-coil	118	138

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3908.m00149

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)