Report for 4254.m00132

 > 4254.m00132, length: 406, copies: 1 

MDVAMALAVLFFCLLLLSSAAITFLLLRHCLSGLRRRHRAAAAADVDAEAAEGGAGARQLMPPCSPPPQQELPLL

RPAAKLVPSTKEEGEPWKLTWREVEALTGGFDEAAVVGRGGSSTVYLASSCRVAVVSPPVAVKVHRWCGGERWLR

AFRQELDLLRRLRHPHIVSLLAYSDDHEEGGALVLEYLSGGTLADRLHGGASPPLPWRHRMRVVHDVAGALEHLH

DGAPPVVHGDVSASNVLLDGRGLGARLCDLGSACEGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGV

LLLEAITGSPAAGIPGPDGGAGGGNLTARLLPRVRTEGVDGLADRRLGDDYDAAEAGDVARIAVECLAAQPGLRP

TMAQVRAAIAEKAATSISIAHHDLHDASDST

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
Ser/Thr pkinase [Pfam fs]	106	308	1.6e-26
Ser/Thr pkinase [Pfam ls]	106	380	5.4e-22

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pto [L. esculentum]	78	380	4e-24
FLS2 [A.thaliana]	97	380	8e-22
Rpg1 [Hordeum vulgare]	99	308	2e-17

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	5	27	in -> out

Report for 4254.m00132

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)