Report for 4366.m00155

 > 4366.m00155, length: 1008, copies: 1 

MRQSRLFYLCSIIFMFYLVQRTEAQITAPWEVDALKAIKGNLIDPQGRLNNWNRGDPCMGNWSYVHCYNETASDG

YLHVLELQLLKLNLSGSLAAELGRLSHMQIMDFMWNNISGSIPKEVGNITSLKLLLLNGNQLTGSLPEEIGFLPN

LDRIQIDQNYISGPIPKSFANLNKTKHFHMNNNSLSGQIPPELSRLPSLVHLLLDNNNLSGYLPPELSKLPKLLI

IQLDNNNFSGTSIPSSYGNITTLLKLSLRNCSLEGPVPDVSGIPQLGYLDLSHNLLNGSIPGSFSGLPNLQRLSL

DNNNLDGSVPSDVWRNIDFSGNRSLILDFQNNSLTNLSNPLSPPANVTILRTENGFLKSSFMEEKCPSCYVRVRK

IRLIGNLDFFCIDGIVMYSATLLFLNKLMDTLAKVDMKQNMLSGNPICTSPNQLNITQYCQSVPVIVPDGSASNA

TVCPPCSTDLPFENILMSPIRCICAIPLYVDYRLKSPGFWDFVPYEGQFQQYLSSGLSLSSYQLEVSQFMWEEGP

RVKMNLKLFPNNTAYFNKSEVLRLRGMFTGWLIPDSDIFGPYELLNFNPGWYNNLFPDRAKSSLSTGAIVGIVVA

AFAAAAFLSSLITLIILRRRSRYSSKRRSAKRIPMKIDGVKDFSFQELSHGTNDFSDSALIGQGGYGKVYRGILS

DGTIVAIKRAQQGSLQGSKEFFTEIELLSRLHHRNLVSLLGYCDEEDEQVVPAAIRFYFGEQMLVYEFMPNGTLR

DHLSARSKEPLNFPTRLRIALGSSRGILYLHTEADPPIFHRDIKASNILLDSKFVAKVADFGLSRLAPEPESEGI

APGHVSTVIKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGRNIVREVVAANQSGMILSVVDSR

MGSYPAECVEKFAALALRCCRDETDARPSIVEVMRELEKIWQMTPDTGSMSSLSLEPSNTATPSSGSRMMVSSSS

GVGNDDHHHYNMSSSDVSGSNLLSGVVPSINPR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	126	149	0.14
LRR [Pfam ls]	150	173	0.98
LRR [Pfam ls]	174	197	2.8
LRR [Pfam ls]	198	221	0.019
LRR [Pfam ls]	270	293	0.0082
LRR [Pfam ls]	294	318	0.07
Ser/Thr pkinase [Pfam fs]	655	934	3.9e-51
Ser/Thr pkinase [Pfam ls]	655	934	2.3e-50

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	102	125	6.9
LRR [sensitive, ls]	102	125	140
LRR [sensitive, ls]	126	149	0.0073
LRR [sensitive, ls]	126	149	0.14
LRR [sensitive, ls]	150	173	0.05
LRR [sensitive, ls]	150	173	0.98
LRR [sensitive, ls]	174	197	0.14
LRR [sensitive, ls]	174	197	2.8
LRR [sensitive, ls]	198	221	0.00095
LRR [sensitive, ls]	198	221	0.019
LRR [sensitive, ls]	222	246	0.86
LRR [sensitive, ls]	222	246	17
LRR [sensitive, ls]	247	269	0.66
LRR [sensitive, ls]	247	269	13
LRR [sensitive, ls]	270	293	0.00042
LRR [sensitive, ls]	270	293	0.0082
LRR [sensitive, ls]	294	318	0.0035
LRR [sensitive, ls]	294	318	0.07

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	4	315	1e-35
CLV2 [A. thaliana]	29	335	6e-26
Xa21 [O. sativa]	34	315	2e-28
Cf-9 [L. pimpinellifolium]	48	431	8e-22
CLV2 [A. thaliana]	68	365	9e-24
Xa21 [O. sativa]	71	375	7e-31
FLS2 [A.thaliana]	75	335	7e-29
Cf-9 [L. pimpinellifolium]	78	325	6e-17
FLS2 [A.thaliana]	78	313	6e-33
FLS2 [A.thaliana]	78	419	6e-28
FLS2 [A.thaliana]	79	190	3e-11
Cf-9 [L. pimpinellifolium]	81	336	5e-23
Cf-9 [L. pimpinellifolium]	81	309	2e-22
CLV2 [A. thaliana]	82	445	5e-21
FLS2 [A.thaliana]	88	940	7e-75
Pto [L. esculentum]	621	938	6e-59
Rpg1 [Hordeum vulgare]	641	940	4e-46
Rpg1 [Hordeum vulgare]	642	940	2e-31

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	378	400	out -> in
putative TM domain	594	616	in -> out

Report for 4366.m00155

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)