Report for 4435.m00199

 > 4435.m00199, length: 405, copies: 1 

MRNGTAFFRFSAKRLTLSRLMLSGWPAASPRLQSTSMQSSHPWQYATESRGAGTVRCPNESLVCWYFPEGIDIYF

ENVGGPMLDVVLLNMRTHGRIAVCGMVSQNALTDPVKHYRDGKIVYVEDMSIGLENAPAAFVGLFSGKNVGKQAF

PSVSLASMETAPTEDLDTAEVSAFFDRSSVKRSLIDPSGILRSSWKFSQDGTTNSICNFMGVICWNPDENRILGL

SLGSLGLQGQFPRGLEHCTSLVRLDLSNNSLSGPIPSGISWQLPDLSSLNLSYNRFSGEIPVNISEMTYLYSIGL

QHNKLTGSIPGKFALLSRLESFNVSDNLLSGPIPVALSKFSTSCFSGNQGLCGVPFDSCSTSYGDYSIGIIGAAV

GFVVGFVGALYISHCLFFLRDAPALRLSHT

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	245	269	0.078
LRR [Pfam ls]	270	293	0.59
LRR [Pfam ls]	294	317	7.6
LRR [Pfam ls]	318	341	1.2

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	245	269	0.004
LRR [sensitive, ls]	245	269	0.078
LRR [sensitive, ls]	270	293	0.03
LRR [sensitive, ls]	270	293	0.59
LRR [sensitive, ls]	294	317	0.39
LRR [sensitive, ls]	294	317	7.6
LRR [sensitive, ls]	318	341	0.059
LRR [sensitive, ls]	318	341	1.2

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	179	345	1e-16
FLS2 [A.thaliana]	186	357	2e-12
Xa21 [O. sativa]	207	337	3e-12
Xa21 [O. sativa]	220	334	2e-12
CLV2 [A. thaliana]	221	333	3e-14
FLS2 [A.thaliana]	224	348	9e-13
CLV2 [A. thaliana]	225	335	2e-13
FLS2 [A.thaliana]	225	334	9e-16
FLS2 [A.thaliana]	225	339	1e-10
Cf-9 [L. pimpinellifolium]	227	355	2e-12
FLS2 [A.thaliana]	232	338	2e-11
FLS2 [A.thaliana]	232	334	2e-11
FLS2 [A.thaliana]	234	353	7e-18

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	371	393	out -> in

Report for 4435.m00199

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)