Report for 4435.m00201

 > 4435.m00201, length: 252, copies: 1 

MSDDIKFVLSLLLLSSLMLFVASDDTECLRTLQKSLVDPRGELESTWNFSGNGFNGFICSFTGVNCWNPSDSTVR

SLHLVSLGLQGQFPEGLQGCSMIEDLNLSGPIPSNISLLVPQLSSLDLSYNSFSGPIPVSITDMAYLKLKTLNLR

HNKLNGEIPWQFCSLAHSVSFSVAENLFSGLVPSCFENFTASIFAGNRRLCGAPLGNCRLRRVNDETSIGAAVGF

VVGFVLAFYFPHWFVFSTSLHSYIFRI

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	117	140	1.6
LRR [Pfam ls]	143	166	0.099

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	73	96	2.5
LRR [sensitive, ls]	73	96	49
LRR [sensitive, ls]	117	140	0.08
LRR [sensitive, ls]	117	140	1.6
LRR [sensitive, ls]	143	166	0.005
LRR [sensitive, ls]	143	166	0.099

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	5	186	4e-15
FLS2 [A.thaliana]	10	218	2e-14

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	5	22	out -> in
putative TM domain	219	241	in -> out

Report for 4435.m00201

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)