Report for 4440.m00134

 > 4440.m00134, length: 221, copies: 1 

MGAGALGVVAMVAAAVVVAMAGANSEGDALSALRRSLRDPGGVLQSWDPTLVNPCTWFHVTCDRDNRVTRLDLGN

LNLSGHLVPELGKLDHLQYLINHQHWNRELYKNNIQGTIPSELGNLKNLISLDLYKNNISGTIPPTLGKLTSLVF

LRLNGNRLTGPIPRELAGISSLKVVDVSSNDLCGTIPTSGPFEHIPLSNFEKNPRLEGPELQGLAVYDTNC

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	123	146	0.0027
LRR [Pfam ls]	147	170	1.3

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	67	90	0.69
LRR [sensitive, ls]	67	90	14
LRR [sensitive, ls]	123	146	0.00014
LRR [sensitive, ls]	123	146	0.0027
LRR [sensitive, ls]	147	170	0.067
LRR [sensitive, ls]	147	170	1.3
LRR [sensitive, ls]	171	204	1.3
LRR [sensitive, ls]	171	204	26

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	16	189	1e-16
Xa21 [O. sativa]	22	189	2e-19
CLV2 [A. thaliana]	29	189	9e-11
FLS2 [A.thaliana]	64	187	8e-15
Xa21 [O. sativa]	67	189	8e-13
FLS2 [A.thaliana]	68	189	3e-15
FLS2 [A.thaliana]	68	187	9e-11
CLV2 [A. thaliana]	71	186	2e-12
CLV2 [A. thaliana]	71	187	2e-11
CLV2 [A. thaliana]	71	187	1e-10
FLS2 [A.thaliana]	71	208	2e-15
FLS2 [A.thaliana]	71	187	2e-14
FLS2 [A.thaliana]	71	187	1e-13
FLS2 [A.thaliana]	71	187	3e-12
Xa21 [O. sativa]	71	187	1e-11
Xa21 [O. sativa]	71	187	1e-10
FLS2 [A.thaliana]	77	187	5e-11
Cf-9 [L. pimpinellifolium]	105	214	1e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	2	24	in -> out

Report for 4440.m00134

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)