Report for 4879.m00145

 > 4879.m00145, length: 648, copies: 2 

MPRAAVGVVVALLWCAALIGGGAGAGQDLAADTAALLAFRDAVGPRLPWASSSSSPCGWRGVRCDAGGGRVVALQ

LPGAKLVGRVPTGTVGNLTALRTLSLRSNALSGGIPVDIGNCGELRALYLQGNQLAGEVPEGFFSLLLLQRLDLS

RNRITGSISPEFNKLRRLATLYLENNGLNGTLPADLDLPKLQLFNVSNNDQLTGAVPASLAGKPASAFSGTGLCG

GPLSPCTNTSPPSPSPSPSPPIPPPPAASQDSKSSKLSGGAIAGIAVGAAAALLVALAVIVLLCFKRGRRKEGRP

ADVDEDASPVSVTVARTDKVEVKRSRSRPSQQTTTASGAKKLVFVGGEPDVPYDLDTLLHASAEVLGKGWLGTTY

RATLEGGAAVVAVKRLREAPIAEREFRDSVAELAALRHENLAPLRAYFYSRDEKLLVSDFVGAGALSSLLHGGGG

AVRRARLGFTSRARIALAAARGVAFIHGAGSSHGNIKSSNIVVNRTHDGAYVTDHGLAQLLGAAVPLKRVTGYRA

PEVSDLRRASREADVYSFGVVLLEMLTGRPPANAVPGFDGVDLPQWVRAVVHEEWTAEVFDASIADEAHAEEEMM

RLLKLAVECTEQRPERRPTMAEVAARIEHIVDTVIRNADVDDFDSVSQ

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	95	118	0.72
LRR [Pfam ls]	119	142	0.96
LRR [Pfam ls]	143	166	0.0033
LRR [Pfam ls]	167	189	3
Ser/Thr pkinase [Pfam ls]	360	623	4.5e-19
Ser/Thr pkinase [Pfam fs]	364	556	3.4e-22

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	70	94	2.8
LRR [sensitive, ls]	70	94	72
LRR [sensitive, ls]	95	118	0.028
LRR [sensitive, ls]	95	118	0.72
LRR [sensitive, ls]	119	142	0.038
LRR [sensitive, ls]	119	142	0.96
LRR [sensitive, ls]	143	166	0.00013
LRR [sensitive, ls]	143	166	0.0033
LRR [sensitive, ls]	167	189	0.12
LRR [sensitive, ls]	167	189	3
LRR [sensitive, ls]	190	214	0.3
LRR [sensitive, ls]	190	214	7.6

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	21	210	3e-19
Xa21 [O. sativa]	26	207	3e-19
CLV2 [A. thaliana]	32	215	2e-11
Xa21 [O. sativa]	59	215	7e-15
Xa21 [O. sativa]	70	210	2e-12
CLV2 [A. thaliana]	71	200	5e-11
CLV2 [A. thaliana]	73	210	6e-12
FLS2 [A.thaliana]	74	627	4e-34
FLS2 [A.thaliana]	74	210	2e-17
FLS2 [A.thaliana]	74	210	1e-14
FLS2 [A.thaliana]	74	210	5e-11
Xa21 [O. sativa]	74	446	9e-17
FLS2 [A.thaliana]	81	210	4e-15
FLS2 [A.thaliana]	81	211	2e-12
Cf-9 [L. pimpinellifolium]	94	210	8e-11
Rpg1 [Hordeum vulgare]	357	641	2e-13
Pto [L. esculentum]	366	629	1e-23

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	5	27	in -> out
putative TM domain	267	289	out -> in
putative TM domain	430	452	in -> out

Report for 4879.m00145

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)