Report for 4992.m00089

 > 4992.m00089, length: 334, copies: 1 

MANLSNLRELHLDDVNILSSRSSWSLILADNTPQLEILSLSQCGISCSIHSSFSRLRSLKIIDLSVNWELNGKVP

EFFAEISSLSILDISDNSFEGQFPTKIFHLKSLRTLDLSMNTDLSINLPEFLDGNNLETLSLTWTNLPYHTPSSF

ANLKSLKSLAISTTGTSKELLPSLIGELPSLKELEMWGSEWSMEKPVLSWVGNLKQLTDLTLGSYDFSQSTPSWI

GNLTSLATLEMWGCNLSTSIPHQIGNLANLTSLRFEDCDFFGQKIPSWIGNFTKLRDLRIDNCGLSGPIPSTIGN

LTQLEYLIIRSNDQLNGRDGNGPRSPFSRGEFTY

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	34	57	0.48
LRR [Pfam ls]	83	106	5
LRR [Pfam ls]	230	253	8.7
LRR [Pfam ls]	279	302	0.11

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	34	57	0.025
LRR [sensitive, ls]	34	57	0.48
LRR [sensitive, ls]	58	82	2.5
LRR [sensitive, ls]	58	82	49
LRR [sensitive, ls]	83	106	0.25
LRR [sensitive, ls]	83	106	5
LRR [sensitive, ls]	107	130	4.9
LRR [sensitive, ls]	107	130	96
LRR [sensitive, ls]	131	154	0.81
LRR [sensitive, ls]	131	154	16
LRR [sensitive, ls]	230	253	0.44
LRR [sensitive, ls]	230	253	8.7
LRR [sensitive, ls]	254	278	0.98
LRR [sensitive, ls]	254	278	19
LRR [sensitive, ls]	279	302	0.0054
LRR [sensitive, ls]	279	302	0.11

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Cf-9 [L. pimpinellifolium]	1	312	1e-12
Cf-9 [L. pimpinellifolium]	1	332	1e-10
FLS2 [A.thaliana]	1	313	7e-18
Xa21 [O. sativa]	1	295	1e-12
Xa21 [O. sativa]	2	312	4e-12
Cf-9 [L. pimpinellifolium]	4	312	6e-11
FLS2 [A.thaliana]	12	313	1e-22
Cf-9 [L. pimpinellifolium]	16	317	6e-20
CLV2 [A. thaliana]	19	312	3e-13
FLS2 [A.thaliana]	31	313	3e-15
CLV2 [A. thaliana]	34	305	9e-11
CLV2 [A. thaliana]	35	313	6e-12
FLS2 [A.thaliana]	35	312	8e-20
Xa21 [O. sativa]	38	312	3e-18
FLS2 [A.thaliana]	45	312	2e-15
Xa21 [O. sativa]	51	317	2e-17

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 4992.m00089

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)