Report for 5318.m00127

 > 5318.m00127, length: 618, copies: 1 

MAARFGPLLLVLPLSSALLVLSAATAPRGRPSQVDVGRQLREELWERNQGHEMLRSWRDGDPCSPSPWEGFSCRW

KDGNLFVVKLNFSSKKLQGPIPAAIGNLTELDEIDLQDNNFTGSIPESFFDLTHLLKLSVKCNPFLNNQLPHGLS

ISVEFSYGGCAYHSPPGASNQRIAVIGGVAGGSLACTFALGFFFVCFNKREKNPQKKDCSSTRNPVFEECSTHKA

TNSAVQQLSLKSIQNATCNFKTLIGEGGFGSVYRGTLAHGEEVAVKGTREFNNEVQMKPAPASIKESCCGLGVNQ

IPKKLFIVLHSGKEAKYGFFGRKFKNKEMLRLLSAVRHDNLVPLIGYCCEKDQEILVYPFMSNGSLQDRLYGEAS

KRKVLDWPTRLSVCIGAARGLAHLHGFAGRCIIHRDVKSSNILLDHSMCGKVADFGFSKYAPQEGDSNASMEVRG

TAGYLDPEYYSTQSLSTKSDVFSFGVVLLEIVTGREPLDVQRPRDEWSLVEWAKPYIREYRIEEIVDPGIKGQYC

SEAMWRVLEVASACTEPFSTFRPSMEDVVRELEDALIIENNASEYMRSIESTGTLGSNRYLSIDRKMFASGSARF

ASFDATKGHLQTMPSLPG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	105	128	0.023
Ser/Thr pkinase [Pfam fs]	243	271	7.1e-06
Ser/Thr pkinase [Pfam ls]	243	554	5.1e-27
Ser/Thr pkinase [Pfam fs]	328	489	3.2e-30

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	79	104	3.7
LRR [sensitive, ls]	79	104	77
LRR [sensitive, ls]	105	128	0.0011
LRR [sensitive, ls]	105	128	0.023

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	82	557	2e-36
Pto [L. esculentum]	224	566	2e-49
Rpg1 [Hordeum vulgare]	238	564	1e-22
Rpg1 [Hordeum vulgare]	246	577	5e-28

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	175	197	out -> in

Report for 5318.m00127

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)