Report for 5322.m00125

 > 5322.m00125, length: 454, copies: 2 

MAGSLSAALCLTLFCLLGACIAPGARANGRHSRRDLDINLGNGNGGGISIGIGGSGGGGGGGSSGGSSGGGGDLR

PCDFENERLYKAYKVIQKFRRTVTCDPQNIISSWSGADLCSTYKGFFCERPPNITDRTIASVDFNGYNLQASSLK

EFVDALPDLALFHANSNNFGGAVPDLSRLQYFYELDLSNNKLSPATFPTDVLKLKNATFVDIRFNSFYGELPGGV

FCSFPQVQAIFVNNNQFSGSLPDNIGDSPVNYLSLANNNFTGEIPKSIARMANTLFEVLFLNNKLSGCLPYELGL

LAKATVIDAGTNQLTGPIPASFACLRKVEQLNLADNLLYGEVPNALCELAFSWSGRLRNLTLSNNYFTSLGSCCW

DLIKEGKLNVDRNCIPYAPNQRSHDECAAFFHRTKTSACPCNTYVPCGHNKHSAAGAGSEQDTAAAEEDKYRTYS

ALHP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	181	205	7.2
LRR [Pfam ls]	356	379	5.1

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	181	205	0.36
LRR [sensitive, ls]	181	205	7.2
LRR [sensitive, ls]	206	230	0.94
LRR [sensitive, ls]	206	230	19
LRR [sensitive, ls]	231	254	1.3
LRR [sensitive, ls]	231	254	26
LRR [sensitive, ls]	303	326	1.6
LRR [sensitive, ls]	303	326	33
LRR [sensitive, ls]	327	350	0.61
LRR [sensitive, ls]	327	350	12
LRR [sensitive, ls]	356	379	0.25
LRR [sensitive, ls]	356	379	5.1

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	89	369	7e-19
CLV2 [A. thaliana]	101	367	3e-12
FLS2 [A.thaliana]	116	368	3e-15
FLS2 [A.thaliana]	126	345	7e-16
FLS2 [A.thaliana]	128	368	9e-16
CLV2 [A. thaliana]	136	368	1e-14
Xa21 [O. sativa]	140	371	2e-15
FLS2 [A.thaliana]	142	361	3e-13
Xa21 [O. sativa]	142	343	2e-18
Xa21 [O. sativa]	143	388	4e-15
Xa21 [O. sativa]	143	343	7e-15
FLS2 [A.thaliana]	149	349	3e-15
Cf-9 [L. pimpinellifolium]	153	346	2e-11
Cf-9 [L. pimpinellifolium]	159	366	1e-10
Xa21 [O. sativa]	166	346	5e-15
FLS2 [A.thaliana]	192	373	7e-13
Xa21 [O. sativa]	232	372	1e-10

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	5	27	in -> out

Report for 5322.m00125

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)