Report for 5359.m00208

 > 5359.m00208, length: 861, copies: 1 

MRSSRGVIRHSVWCLVFVWSWRVAAAQDQQAPKTDPVEAVALNTIMRRWGKEASSEWNVSGDLCSGFAADKNDWD

YYPNINPFIKCDCTFSNNTLCRITKLDLNYNYLTGFIPSFIGKFTSMKYLALGFNPLSGPLPKELGNLTNLISLG

ISLNNFTGGLPEELGNLTKLKQFLASDNGFTGKIPDYLGSMTNLEEMRIGDIVNGISPLALISNLTSLNTLILRN

CKIYGDLGAVDFSMFEKLSLLDLSFNNITGKVSQSILNLGNLQFLFLGNNNLAGRLPDGISSSLKAIDFSYNQLT

GSIPSWASQNNLQLNLVANNFLLGSTSNSNTSTRGSDNTIYEADPANLGAATYYVTGQTRWGVSSVGHYFRATDA

KNIIYSSQNFNNVVDSKLFETGRVSPSSLRYYGLGLENGNYTVLLRFAEIAFPDSQTWLSLGRRVFDIYIQGALK

EKDFDIRKTAGGKSFSVVNRSFMVTVSKNFLEIHLFWAGKGGGIYGPMISALSVTPNFTPTVRNGIPKSESKVGI

IAGISIGAIVLVLAALFGVFTLLKKRRALAYQKEELYYLVGQPDVFNYAELKLATDNFSSQNILGEGGFGPVYKQ

YFVHAQNIHVTNLAGKTPLLVYEYLENGSLDQAIFGDSSLNLDWVTRFEIILGIASGLTYLHEESSVRIVHRDIK

ASNVLLDTDLTPKISDFGLAKLYDEKQTHVSTRIAGTLGYLAPEYAMRGHLSEKADVFAFGVVMLETVAGRPNTN

NSLEENKIYLLEWAWGMYDKDQALEIVDPTIKDFDKDEAFRVINVALLCTQGSPHQRPPMSRVVAMLTRDVDVPK

VVTKPSYITEWQLRGGGNNGNTSNSYAGSSYQPEVQ

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	97	120	0.068
LRR [Pfam ls]	145	168	3.2
LRR [Pfam ls]	242	265	2
LRR [Pfam ls]	266	286	7.2
LRR [Pfam ls]	288	312	5.7
Ser/Thr pkinase [Pfam ls]	583	819	2.9e-14
Ser/Thr pkinase [Pfam fs]	615	747	3.1e-31

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	97	120	0.0034
LRR [sensitive, ls]	97	120	0.068
LRR [sensitive, ls]	121	144	0.69
LRR [sensitive, ls]	121	144	14
LRR [sensitive, ls]	145	168	0.16
LRR [sensitive, ls]	145	168	3.2
LRR [sensitive, ls]	169	192	1.1
LRR [sensitive, ls]	169	192	21
LRR [sensitive, ls]	217	241	1.8
LRR [sensitive, ls]	217	241	36
LRR [sensitive, ls]	242	265	0.1
LRR [sensitive, ls]	242	265	2
LRR [sensitive, ls]	266	286	0.36
LRR [sensitive, ls]	266	286	7.2
LRR [sensitive, ls]	288	312	0.28
LRR [sensitive, ls]	288	312	5.7

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	11	324	2e-12
Xa21 [O. sativa]	68	321	3e-19
Cf-9 [L. pimpinellifolium]	84	329	3e-17
CLV2 [A. thaliana]	89	304	3e-14
Xa21 [O. sativa]	90	322	1e-15
FLS2 [A.thaliana]	91	819	3e-47
Xa21 [O. sativa]	91	285	3e-19
Xa21 [O. sativa]	91	304	4e-18
FLS2 [A.thaliana]	95	352	4e-24
FLS2 [A.thaliana]	95	321	4e-20
Xa21 [O. sativa]	95	329	1e-22
Cf-9 [L. pimpinellifolium]	97	329	2e-15
CLV2 [A. thaliana]	97	337	4e-19
Xa21 [O. sativa]	97	324	2e-21
Cf-9 [L. pimpinellifolium]	98	284	3e-14
FLS2 [A.thaliana]	98	329	1e-22
CLV2 [A. thaliana]	101	331	4e-19
CLV2 [A. thaliana]	101	303	5e-12
FLS2 [A.thaliana]	101	304	2e-21
FLS2 [A.thaliana]	101	305	3e-19
FLS2 [A.thaliana]	106	324	1e-27
FLS2 [A.thaliana]	106	320	8e-22
FLS2 [A.thaliana]	132	349	7e-16
Pto [L. esculentum]	571	814	9e-39
Rpg1 [Hordeum vulgare]	571	818	2e-26
Rpg1 [Hordeum vulgare]	586	819	3e-22

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	526	548	out -> in

Report for 5359.m00208

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)