Report for 5404.m00139

 > 5404.m00139, length: 446, copies: 1 

MAAASGHNARLLALALALLLAALHLHGVVCDPSHTHFAMVSRNAPSWRPDRGGQGKPAPSPEDFLNENLQALYPV

IQAFKATITSDPRGVTASWVGPNLCDSYFGGDMYKGFYCEHPPAPPGATTPKDNTTLTIASIDFNGYGLGAPSLS

GFVDAFPDLALFHANSNNFSGEVPDLTGLPYFYELDLSNNNFSGAFPATVVPLGRLLFLDLRFNRFVGTVPPPVF

DLTVVALFLNNNGFYGNIPDNFGSTTAEYLVVANNQFTGPIPRSIYNTSANLSEVLFLNNHLSGCLPYEIGLVEG

LTVFDAGGNDITGPIPLSLGCLGLVEELNLAGNQLYGHIPDVLCALAKTGKLQNLSLSDNYFHSVGRRHCLELVR

SKVLDVRLNCIPNFPHQRPALECARFYADPPQHCPFVPHIPCDLPGFRPPAAALPSAVAAEEGGGGGGGGN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	205	228	9.2
LRR [Pfam ls]	324	347	8.1

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	158	180	2.4
LRR [sensitive, ls]	158	180	49
LRR [sensitive, ls]	181	204	2.4
LRR [sensitive, ls]	181	204	49
LRR [sensitive, ls]	205	228	0.45
LRR [sensitive, ls]	205	228	9.2
LRR [sensitive, ls]	251	274	3.6
LRR [sensitive, ls]	251	274	73
LRR [sensitive, ls]	300	323	0.65
LRR [sensitive, ls]	300	323	13
LRR [sensitive, ls]	324	347	0.4
LRR [sensitive, ls]	324	347	8.1
LRR [sensitive, ls]	351	374	0.77
LRR [sensitive, ls]	351	374	16

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	61	340	3e-19
FLS2 [A.thaliana]	70	366	5e-19
CLV2 [A. thaliana]	98	362	5e-20
CLV2 [A. thaliana]	126	363	1e-11
CLV2 [A. thaliana]	132	362	7e-15
Xa21 [O. sativa]	134	360	4e-18
Cf-9 [L. pimpinellifolium]	137	363	2e-11
Xa21 [O. sativa]	148	386	2e-15
FLS2 [A.thaliana]	151	396	9e-21
FLS2 [A.thaliana]	158	363	1e-14
FLS2 [A.thaliana]	159	359	4e-18
Cf-9 [L. pimpinellifolium]	166	384	5e-14
Xa21 [O. sativa]	166	357	2e-16
FLS2 [A.thaliana]	167	340	3e-15
FLS2 [A.thaliana]	174	383	5e-17
Xa21 [O. sativa]	205	341	6e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	7	29	in -> out

Report for 5404.m00139

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)