Report for 5470.m00129

 > 5470.m00129, length: 1174, copies: 1 

MSQHYTKTICIAVVLVAVLFSLSSAAAAGSGAAVSVQLEALLEFKNGVADDPLGVLAGWRVGKSGDGAVRGGALP

RHCNWTGVACDGAGQVTSIQLPESKLRGALSPFLGNISTLQVIDLTSNAFAGGIPPQLGRLGELEQLVVSSNYFA

GGIPSSLCNCSAMWALALNVNNLTGAIPSCIGDLSNLEIFEAYLNNLDGELPPSMAKLKGIMVVDLSCNQLSGSI

PPEIGDLSNLQILQLYENRFSGHIPRELGRCKNLTLLNIFSNGFTGEIPGELGELTNLEVMRLYKNALTSEIPRS

LRRCVSLLNLDLSMNQLAGPIPPELGELPSLQRLSLHANRLAGTVPASLTNLVNLTILELSENHLSGPLPASIGS

LRNLRRLIVQNNSLSGQIPASISNCTQLANASMSFNLFSGPLPAGLGRLQSLMFLSLGQNSLAGDIPDDLFDCGQ

LQKLDLSENSFTGGLSRLVGQLGNLTVLQLQGNALSGEIPEEIGNMTKLISLKLGRNRFAGHVPASISNMSSLQL

LDLGHNRLDGVFPAEVFELRQLTILGAGSNRFAGPIPDAVANLRSLSFLDLSSNMLNGTVPAALGRLDQLLTLDL

SHNRLAGAIPGAVIASMSNVQMYLNLSNNAFTGAIPAEIGGLVMVQTIDLSNNQLSGGVPATLAGCKNLYSLDLS

GNSLTGELPANLFPQLDLLTTLNISGNDLDGEIPADIAALKHIQTLDVSRNAFAGAIPPALANLTALRSLNLSSN

TFEGPVPDGGVFRNLTMSSLQGNAGLCGGKLLAPCHGHAAGKKRVFSRTGLVILVVLIALSTLLLLMVATILLVS

YRRYRRKRRAADIAGDSPEAAVVVPELRRFSYGQLAAATNSFDQGNVIGSSNLSTVYKGVLAGDADGGMVVAVKR

LNLEQFPSKSDKCFLTELATLSRLRHKNLARVVGYAWEAGKIKALVLDYMVNGDLDGAIHGGAAAPPPAPSRWTV

RERLRVCVSVAHGLVYLHSGYDFPVVHCDVKPSNVLLDGDWEARVSDFGTARMLGVHLPAAANAAAQSTATSSAF

RGTVGYMAPEFAYMRTVSTKVDVFSFGVLAMELFTGRRPTGTIEEDGVPLTLQQLVDNAVSRGLDGVHAVLDPRM

KVATEADLSTAADVLAVALSCAAFEPADRPDMGAVLSSLLKMSKLVGED

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	114	137	2.9
LRR [Pfam ls]	210	233	2.1
LRR [Pfam ls]	234	257	0.2
LRR [Pfam ls]	258	281	0.24
LRR [Pfam ls]	282	305	7.5
LRR [Pfam ls]	330	353	2.8
LRR [Pfam ls]	354	377	0.095
LRR [Pfam ls]	378	401	0.11
LRR [Pfam ls]	450	473	1.3
LRR [Pfam ls]	474	497	0.0049
LRR [Pfam ls]	522	545	0.64
LRR [Pfam ls]	570	593	2.3
LRR [Pfam ls]	594	618	0.24
LRR [Pfam ls]	644	667	1.3
LRR [Pfam ls]	668	692	0.002
LRR [Pfam ls]	693	716	0.23
LRR [Pfam ls]	717	740	0.17
LRR [Pfam ls]	741	766	0.6
Ser/Thr pkinase [Pfam fs]	867	1090	8e-35
Ser/Thr pkinase [Pfam ls]	867	1166	2.5e-35

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	114	137	0.14
LRR [sensitive, ls]	114	137	2.9
LRR [sensitive, ls]	138	161	0.61
LRR [sensitive, ls]	138	161	12
LRR [sensitive, ls]	186	209	2.6
LRR [sensitive, ls]	186	209	52
LRR [sensitive, ls]	210	233	0.1
LRR [sensitive, ls]	210	233	2.1
LRR [sensitive, ls]	234	257	0.01
LRR [sensitive, ls]	234	257	0.2
LRR [sensitive, ls]	258	281	0.012
LRR [sensitive, ls]	258	281	0.24
LRR [sensitive, ls]	282	305	0.37
LRR [sensitive, ls]	282	305	7.5
LRR [sensitive, ls]	306	329	0.81
LRR [sensitive, ls]	306	329	16
LRR [sensitive, ls]	330	353	0.14
LRR [sensitive, ls]	330	353	2.8
LRR [sensitive, ls]	354	377	0.0047
LRR [sensitive, ls]	354	377	0.095
LRR [sensitive, ls]	378	401	0.0055
LRR [sensitive, ls]	378	401	0.11
LRR [sensitive, ls]	426	449	1.6
LRR [sensitive, ls]	426	449	33
LRR [sensitive, ls]	450	473	0.065
LRR [sensitive, ls]	450	473	1.3
LRR [sensitive, ls]	474	497	0.00024
LRR [sensitive, ls]	474	497	0.0049
LRR [sensitive, ls]	498	521	0.85
LRR [sensitive, ls]	498	521	17
LRR [sensitive, ls]	522	545	0.032
LRR [sensitive, ls]	522	545	0.64
LRR [sensitive, ls]	546	569	0.87
LRR [sensitive, ls]	546	569	18
LRR [sensitive, ls]	570	593	0.12
LRR [sensitive, ls]	570	593	2.3
LRR [sensitive, ls]	594	618	0.012
LRR [sensitive, ls]	594	618	0.24
LRR [sensitive, ls]	619	643	6.4
LRR [sensitive, ls]	619	643	130
LRR [sensitive, ls]	644	667	0.064
LRR [sensitive, ls]	644	667	1.3
LRR [sensitive, ls]	668	692	9.8e-05
LRR [sensitive, ls]	668	692	0.002
LRR [sensitive, ls]	693	716	0.012
LRR [sensitive, ls]	693	716	0.23
LRR [sensitive, ls]	717	740	0.0086
LRR [sensitive, ls]	717	740	0.17
LRR [sensitive, ls]	741	766	0.03
LRR [sensitive, ls]	741	766	0.6

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	17	660	2e-88
FLS2 [A.thaliana]	37	1167	0
Cf-9 [L. pimpinellifolium]	78	787	3e-78
CLV2 [A. thaliana]	79	640	4e-71
CLV2 [A. thaliana]	196	777	1e-66
Xa21 [O. sativa]	211	960	1e-104
CLV2 [A. thaliana]	307	743	2e-60
Pto [L. esculentum]	851	1164	4e-29
Rpg1 [Hordeum vulgare]	853	1164	2e-27
Rpg1 [Hordeum vulgare]	855	1167	6e-22

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	12	34	in -> out
putative TM domain	802	824	out -> in

Report for 5470.m00129

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)