Report for 5494.m00116

 > 5494.m00116, length: 941, copies: 1 

MGWRMAVSRLLHGCVLVLLLAAAVVQAQRAATRTDPTEAAALNAVFAKLGQQAQSSWNLSGDPCTGRATDGSAID

DTSFNPAITCDCTFQNSTICRITKLKIHAVDASGPIPEELRNLTRLTDLNLGQNLLSGPLPSFIGELTNMQKMTF

GINSLSGPIPKELGNLTNLISLGLGSNHFNGSLPTELGNLIKLQELYIDSAGLSGPLPSSLSKLTRMQILWASDN

NFTGQIPDYIGSWNLTDLRFQGNSFQGPIPAALSNLVQLSSLILRNCRISDNLASLDFSKFASLSLLDFSYNQLS

GNFPPWASDKNLQFILPSGLACLQRNTSFFLGSPQSSSFAVNCGSNRFISGSDNLRYETDDVNLQAASYNVTGAP

TWGVSNVGKFMDAPNGNYIIYSSRQFQHTLDSELFLTSRMSPSSLRYYGIGLENGNYTVTLQFAEFGIEDTQSWK

SLGRRVFDIYVQGERKEKNFDIRKTAGDKSYTVVKKQYKVPVTKNFLEIHLFWAGKGTCCIPTQGYYGPTISALS

VIPAGSIFAYLCKIPFSLFNLTSGLCSDFTPTVGNTAHKNKSTSKTGVIVGVVVGVTVLGLVALVGIFMWRQKRR

KLSLEQQELYSIVGRPNVFSYSELRSATENFSSSNRLGEGGYGTVYKGKLTDGRVVAVKQLSQTSHQGKKQFATE

IETISRVQHRNLVKLYGCCLEGNNPLLVYEYMENGSLDKALFGTEKLTIDWPARFEICLGIARGLAYLHEESSIC

VVHRDIKASNVLIDANLNPKISDFGLAKLYDDKKTHVSTKVAGTFGYLAPEYAMRGHMTEKVDVFAFGVAWELYE

NNNPLGLVDPKLKEFNREEVLRAIRVALLCTQWSPHQRAPMSRVVSMLAGDVEVPDVLTKPSYITELADHGWQHQ

LRQQRSHRAVELGAGIGLGAARLVIVLELRHPGRPVIFARV

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	120	143	2.3
LRR [Pfam ls]	192	215	2.3
LRR [Pfam ls]	239	262	0.24
LRR [Pfam ls]	263	287	7.3
LRR [Pfam ls]	288	310	8.4
Ser/Thr pkinase [Pfam fs]	631	819	1.3e-54
Ser/Thr pkinase [Pfam ls]	631	875	2e-47

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	120	143	0.11
LRR [sensitive, ls]	120	143	2.3
LRR [sensitive, ls]	144	167	3.7
LRR [sensitive, ls]	144	167	75
LRR [sensitive, ls]	168	191	1.2
LRR [sensitive, ls]	168	191	24
LRR [sensitive, ls]	192	215	0.12
LRR [sensitive, ls]	192	215	2.3
LRR [sensitive, ls]	216	236	6.6
LRR [sensitive, ls]	216	236	130
LRR [sensitive, ls]	239	262	0.012
LRR [sensitive, ls]	239	262	0.24
LRR [sensitive, ls]	263	287	0.36
LRR [sensitive, ls]	263	287	7.3
LRR [sensitive, ls]	288	310	0.42
LRR [sensitive, ls]	288	310	8.4

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	69	312	4e-20
Cf-9 [L. pimpinellifolium]	82	311	4e-18
FLS2 [A.thaliana]	83	304	4e-24
Cf-9 [L. pimpinellifolium]	84	304	3e-14
Cf-9 [L. pimpinellifolium]	92	301	3e-19
Cf-9 [L. pimpinellifolium]	92	341	2e-14
FLS2 [A.thaliana]	92	312	3e-19
Xa21 [O. sativa]	92	304	1e-20
FLS2 [A.thaliana]	94	304	2e-28
FLS2 [A.thaliana]	94	315	6e-26
Xa21 [O. sativa]	94	249	3e-13
Cf-9 [L. pimpinellifolium]	96	306	4e-13
CLV2 [A. thaliana]	96	332	4e-13
Xa21 [O. sativa]	96	305	5e-26
FLS2 [A.thaliana]	97	304	5e-28
Cf-9 [L. pimpinellifolium]	108	304	4e-13
CLV2 [A. thaliana]	108	286	2e-18
CLV2 [A. thaliana]	108	304	1e-17
CLV2 [A. thaliana]	108	304	9e-16
FLS2 [A.thaliana]	108	354	1e-29
FLS2 [A.thaliana]	108	304	6e-22
FLS2 [A.thaliana]	108	304	1e-19
FLS2 [A.thaliana]	108	249	7e-16
CLV2 [A. thaliana]	121	305	7e-15
Xa21 [O. sativa]	527	713	6e-16
FLS2 [A.thaliana]	550	876	6e-39
Rpg1 [Hordeum vulgare]	597	874	3e-32
Pto [L. esculentum]	619	870	9e-50
Rpg1 [Hordeum vulgare]	619	819	2e-26

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	515	537	out -> in
putative TM domain	573	595	in -> out

Report for 5494.m00116

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)