Report for 5501.m00156

 > 5501.m00156, length: 1061, copies: 1 

MGKHTYDEEAPKRPGETEDWAKNFFWRFCRTVPGSVADAIELDVPGFNYEVPVIVKLLAECTKTKLLPGAVTDAT

CELRLDCMRSGFASAQVASSVSNLKSVHAENEGKGLGNLWKERSLREFLILEKDSNISTSHGCFVEERTALMDIG

SSLTRSNGTVPPSWGRGDGDDDCCLWERVKCSNITGRVSHLYFSNLYDSLEVLNAHGDSFWRFNTTVFSSFPELQ

FLDLSSIYPSSLNIDGLVGLKLPKLQHLNLSYNWLQESILADLGELVSLEVLDASSNAMSGVVPTAVLKNLTNLK

ELNLSANGFSGSLPGSLLELPHLDPSGSSLAGRTPINSSLEPVSLQVLNLNNNRMSGALPTERAFGYLRNLRELH

LSSNNFTGNISTFLLSLPHIERLDLSGNTFEGPIPITPSSNLSLSLKGLRFSQNNLSGKLSFFWLRNLTKLEEIN

LSGNINLAVDVNIPGWAPPFQLKQLALSGCGLDKGIIAEPHFLRTQHHLQELDLSNNNLSGRMPNWLFTKEATLV

NLNLGNNSLTGSLSPIWHPQTALQSIVISTNRITGKLPANFSAIFPSLSTLDLSDNNFHGEIPMSLCSIKHMKDL

SLSNNNFSGKMPTCVFTDFLELWTLSASNNQLGGLVFGGMKKLSIGFAMHLQNNKFEGTLPRNLSGALVIMDLHD

NSLSGELDTSFWNLSKLQVLDLSGNHITGSIPQKICSLASIEILDLSNNNLSGSIPRCASASLSSLNLYGNSLSG

NISDDLFNTSNLMYLDMRHNKLTGNLNWLRHLDKIKTLSLGWNDFEGQITPNLCKLKCPRIIDFSHNKLSGSLPP

CVGNISCESDTAAQNYSPLLLIYVIIEAYIIVHDPIDFTFATKGGQYTYGYNFFDLMSGIDLSGNMLSGEIPWEL

GNLSHIKSLNLSNNFFTGQIPASFANMSEIESLDLSHNELSGLIPWQLTKLSSLAVFSVAYNNLSGCIPNSGQFG

TYGMDSYQGNSNLRSMSKGNICSPDSGAGDLPSEGRDSMADDPVLYAVSAASFVLAFWGTVAFLFFHPLGRRAIL

ATRNLVFWCGH

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	249	272	0.16
LRR [Pfam ls]	273	297	1.1
LRR [Pfam ls]	298	321	0.2
LRR [Pfam ls]	344	369	5.3
LRR [Pfam ls]	370	393	0.13
LRR [Pfam ls]	394	415	5.3
LRR [Pfam ls]	420	444	3.3
LRR [Pfam ls]	498	522	0.08
LRR [Pfam ls]	523	545	2.5
LRR [Pfam ls]	572	595	2.3
LRR [Pfam ls]	596	620	5.7
LRR [Pfam ls]	667	690	8.5
LRR [Pfam ls]	691	714	0.0026
LRR [Pfam ls]	715	735	0.55
LRR [Pfam ls]	737	760	1.7
LRR [Pfam ls]	761	783	8.5
LRR [Pfam ls]	881	904	7.7
LRR [Pfam ls]	905	928	0.014
LRR [Pfam ls]	929	952	0.098

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	199	222	2.6
LRR [sensitive, ls]	199	222	52
LRR [sensitive, ls]	249	272	0.0077
LRR [sensitive, ls]	249	272	0.16
LRR [sensitive, ls]	273	297	0.056
LRR [sensitive, ls]	273	297	1.1
LRR [sensitive, ls]	298	321	0.0098
LRR [sensitive, ls]	298	321	0.2
LRR [sensitive, ls]	344	369	0.26
LRR [sensitive, ls]	344	369	5.3
LRR [sensitive, ls]	370	393	0.0063
LRR [sensitive, ls]	370	393	0.13
LRR [sensitive, ls]	394	415	0.26
LRR [sensitive, ls]	394	415	5.3
LRR [sensitive, ls]	420	444	0.16
LRR [sensitive, ls]	420	444	3.3
LRR [sensitive, ls]	445	470	2.9
LRR [sensitive, ls]	445	470	58
LRR [sensitive, ls]	471	494	2.8
LRR [sensitive, ls]	471	494	56
LRR [sensitive, ls]	498	522	0.0039
LRR [sensitive, ls]	498	522	0.08
LRR [sensitive, ls]	523	545	0.13
LRR [sensitive, ls]	523	545	2.5
LRR [sensitive, ls]	547	567	1.5
LRR [sensitive, ls]	547	567	29
LRR [sensitive, ls]	572	595	0.11
LRR [sensitive, ls]	572	595	2.3
LRR [sensitive, ls]	596	620	0.28
LRR [sensitive, ls]	596	620	5.7
LRR [sensitive, ls]	621	644	1.2
LRR [sensitive, ls]	621	644	25
LRR [sensitive, ls]	667	690	0.42
LRR [sensitive, ls]	667	690	8.5
LRR [sensitive, ls]	691	714	0.00013
LRR [sensitive, ls]	691	714	0.0026
LRR [sensitive, ls]	715	735	0.027
LRR [sensitive, ls]	715	735	0.55
LRR [sensitive, ls]	737	760	0.084
LRR [sensitive, ls]	737	760	1.7
LRR [sensitive, ls]	761	783	0.42
LRR [sensitive, ls]	761	783	8.5
LRR [sensitive, ls]	784	807	0.58
LRR [sensitive, ls]	784	807	12
LRR [sensitive, ls]	808	831	0.65
LRR [sensitive, ls]	808	831	13
LRR [sensitive, ls]	881	904	0.38
LRR [sensitive, ls]	881	904	7.7
LRR [sensitive, ls]	905	928	0.00072
LRR [sensitive, ls]	905	928	0.014
LRR [sensitive, ls]	929	952	0.0048
LRR [sensitive, ls]	929	952	0.098
LRR [sensitive, ls]	953	975	5.6
LRR [sensitive, ls]	953	975	110

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	124	765	3e-47
CLV2 [A. thaliana]	173	821	5e-43
Cf-9 [L. pimpinellifolium]	207	732	4e-34
FLS2 [A.thaliana]	229	747	5e-49
Xa21 [O. sativa]	229	747	4e-30
CLV2 [A. thaliana]	246	587	2e-21
FLS2 [A.thaliana]	268	993	2e-73
FLS2 [A.thaliana]	269	971	6e-63
Cf-9 [L. pimpinellifolium]	293	997	1e-73
CLV2 [A. thaliana]	298	1053	7e-63
Cf-9 [L. pimpinellifolium]	348	972	3e-44
FLS2 [A.thaliana]	348	987	6e-52
Xa21 [O. sativa]	373	988	3e-48
FLS2 [A.thaliana]	515	969	2e-41
CLV2 [A. thaliana]	521	969	2e-35
Cf-9 [L. pimpinellifolium]	576	975	9e-26
Xa21 [O. sativa]	638	971	6e-26

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	1019	1041	out -> in

Report for 5501.m00156

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)