Report for 5573.m00139

 > 5573.m00139, length: 526, copies: 1 

MSDSELSQSTVVFGLHLWELVGIGVGAAFVLLLVLLSLLCLVASRRRRRRRGVAVATPVLHLATAVAPPKHPGKP

PKDIQEVPSRAAAAAAAPKAQPAQVIQAPPPQPPPSESIQIETGKEHRITFREQQHQPPQPPPYHQRSGGPSSRG

GSGESRGGGGGGGGGGAEPGVPEVSHLGWGHWYTLKELEDATAMFADEKVIGEGGYGIVYHGVLEDGTQVAVKNL

LNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCAEGNQRMLVYEYVNNGNLEQWLHGDVGPVSPLTWDMRMKIIL

GTAKGLMYLHEGLEPKVVHRDVKSSNILLDKTWNAKLSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYAGTGMLN

ETSDVYSFGILIMEIISGRVPVDYNRPPGEVNLVEWLKTMVSNRNSEGVLDPKMTEKPTSRALKKALLVALRCVD

PEARKRPKIGHVIHMLEVDDFPYRDERRGGKAPGQVKSGEIPPVEAGDSSGNNTPKETPKGQPKDEPFKWRNQAA

A

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
Ser/Thr pkinase [Pfam fs]	195	396	1.6e-46
Ser/Thr pkinase [Pfam ls]	195	468	6.8e-45

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pto [L. esculentum]	167	467	3e-58
Rpg1 [Hordeum vulgare]	183	466	2e-37
Rpg1 [Hordeum vulgare]	183	470	1e-34
FLS2 [A.thaliana]	186	468	1e-37

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	20	42	out -> in

Report for 5573.m00139

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)