Report for 5799.m00136

 > 5799.m00136, length: 797, copies: 2 

MGGKNLVVLFLVSVVMAMVPGSTQLQASQTWSLLKIQQMLGYPAVLGHWHNYTDFCYGGDYKTTSAFVECYGDSV

TQLHIIGGGGGSPTPPPLPKTFSIDSFFTTLSRLPDLRVLTLTGLGLWGPLPGKVSRLAALEIVNVSGNYLYGEL

PLALSRLGNLQTFIADDNMLSGELPAWLGRLPVLAVLSLRNNSLEGTLPGSVSDMASLRSLSLASNNLSGNLPDM

SGAKNLQVIDLANNSLGPEFPRLGRKVASVVLAGNRFSDGLPPELASFYLLERLDVSRNRFVGPFMPALLSLPSI

EYLSVAGNRFTGMLSGNMSCGNNLKFVDVSSNLLTGSLPTCLAAGAVGKAADSDSDSSKTVLFSANCLATGDDTQ

HPSPFCKNQAIAVGIVPDQARRKPSGARSGLVAGVVAAAIAAAVLAGVAVFLAVRKASMRRAQARPPRRLVEHAS

SAYPSKLFADARYISQTVKLGALGIPAYRSFSLVELEAATNDFEVSNMMGQDSHGQMYRGRLSNGTPVTIRSLKV

KRSQTSQSFNHHIEMISKLRHRHLVSALGHCFEYNLDDSTITQLYLVFEYVQNGNLRGRISQGTEGRKLTWVQRI

STAIGVAKGIQFLHGGIIPGLFANNLKITNILLDQNLVAKIGSYNIPILSETMKSEGGSGNKYPSDSVPNGDKLD

IFDFGVILLEVISGRPITSIYEVEIMKEQLQSALTAEGTAKRRSFVDPAVSKGCSDESVKTVMEICLRCLAKEAV

QRPSVEDVLWNLQFAAQVQDDWRGDSRSSEESPLSPSQIPRDLEDDQ

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	207	229	1.2
LRR [Pfam ls]	230	249	6.2
Ser/Thr pkinase [Pfam ls]	493	764	1.6e-11
Ser/Thr pkinase [Pfam fs]	538	615	1.1e-07
Ser/Thr pkinase [Pfam fs]	679	764	0.078

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	135	158	0.75
LRR [sensitive, ls]	135	158	16
LRR [sensitive, ls]	159	182	0.38
LRR [sensitive, ls]	159	182	7.9
LRR [sensitive, ls]	183	206	0.45
LRR [sensitive, ls]	183	206	9.3
LRR [sensitive, ls]	207	229	0.059
LRR [sensitive, ls]	207	229	1.2
LRR [sensitive, ls]	230	249	0.3
LRR [sensitive, ls]	230	249	6.2
LRR [sensitive, ls]	251	274	2.5
LRR [sensitive, ls]	251	274	53
LRR [sensitive, ls]	275	298	1.1
LRR [sensitive, ls]	275	298	23
LRR [sensitive, ls]	299	319	0.94
LRR [sensitive, ls]	299	319	19
LRR [sensitive, ls]	323	343	0.52
LRR [sensitive, ls]	323	343	11

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	58	339	7e-21
Cf-9 [L. pimpinellifolium]	101	339	2e-17
FLS2 [A.thaliana]	104	339	6e-23
Xa21 [O. sativa]	104	270	3e-16
Xa21 [O. sativa]	104	339	1e-15
Cf-9 [L. pimpinellifolium]	105	339	1e-13
Xa21 [O. sativa]	105	339	2e-22
CLV2 [A. thaliana]	106	338	1e-16
CLV2 [A. thaliana]	106	336	8e-14
FLS2 [A.thaliana]	106	781	6e-47
FLS2 [A.thaliana]	106	344	6e-25
FLS2 [A.thaliana]	106	339	1e-21
FLS2 [A.thaliana]	106	338	7e-18
Xa21 [O. sativa]	108	339	7e-22
FLS2 [A.thaliana]	109	342	6e-22
Cf-9 [L. pimpinellifolium]	112	342	3e-12
CLV2 [A. thaliana]	112	339	3e-23
CLV2 [A. thaliana]	115	340	1e-14
FLS2 [A.thaliana]	122	343	1e-20
FLS2 [A.thaliana]	122	342	5e-16
FLS2 [A.thaliana]	124	344	1e-24
Xa21 [O. sativa]	124	601	2e-26
Cf-9 [L. pimpinellifolium]	136	342	4e-16
Cf-9 [L. pimpinellifolium]	136	379	9e-15
Xa21 [O. sativa]	136	342	5e-16
FLS2 [A.thaliana]	139	339	8e-12
CLV2 [A. thaliana]	150	344	8e-14
Xa21 [O. sativa]	187	340	3e-11
Rpg1 [Hordeum vulgare]	476	781	1e-20
Pto [L. esculentum]	477	770	5e-38
Rpg1 [Hordeum vulgare]	479	759	1e-23

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	407	429	out -> in

Report for 5799.m00136

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)