Report for 5839.m00143

 > 5839.m00143, length: 414, copies: 1 

MRKEVVLVAMVVVVVVSWVVAAGGEAAAAAAAVVVDPAWRFPSARLRDAYVALQTWKQTAIFSDPKNLTADWVGP

AVCAYTGVFCAPLPGAGGAPGEVAVAGVDLNHGDIAGYLPAELGLLTDLALLHLNSNRFCGLVPDALRRLRRLHE

LDLSNNRLVGAFPSAVLDLPALRFLDLRYNDFEGAVPRQLFDLPLDAIFLNHNRLRFALPDNFGNSPASVIVLAG

NHFGGCLPASLGNMSATLNEILLINNGLDSCVPPEVGLLREVTVFDVSFNSLAGPLPPEVTGMRKVEQLDVAHNR

LAGAVPEAVCDLPRLKNFTFSYNYFTGEPPSCARVVPAADGDRRNCLPNRPYQRTPRQCAAFYAAPPVDCAAFQC

KPFVPSPLLPPPPPPAYPGPLPPVYPVPYASPPPPPLYR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	123	146	0.79
LRR [Pfam ls]	147	170	0.12
LRR [Pfam ls]	171	194	4.8
LRR [Pfam ls]	290	313	4.9

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	123	146	0.029
LRR [sensitive, ls]	123	146	0.79
LRR [sensitive, ls]	147	170	0.0046
LRR [sensitive, ls]	147	170	0.12
LRR [sensitive, ls]	171	194	0.18
LRR [sensitive, ls]	171	194	4.8
LRR [sensitive, ls]	266	289	1.7
LRR [sensitive, ls]	266	289	46
LRR [sensitive, ls]	290	313	0.18
LRR [sensitive, ls]	290	313	4.9

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	51	296	8e-21
FLS2 [A.thaliana]	52	331	1e-23
CLV2 [A. thaliana]	72	330	2e-16
Xa21 [O. sativa]	88	331	3e-21
FLS2 [A.thaliana]	92	330	4e-18
FLS2 [A.thaliana]	96	330	7e-18
CLV2 [A. thaliana]	99	331	6e-22
Xa21 [O. sativa]	99	331	9e-23
FLS2 [A.thaliana]	102	330	1e-17
Cf-9 [L. pimpinellifolium]	103	328	8e-11
CLV2 [A. thaliana]	103	331	7e-23
CLV2 [A. thaliana]	103	330	1e-16
CLV2 [A. thaliana]	103	327	1e-10
FLS2 [A.thaliana]	103	330	1e-21
FLS2 [A.thaliana]	103	331	1e-18
FLS2 [A.thaliana]	103	308	1e-14
Xa21 [O. sativa]	103	338	3e-14
Xa21 [O. sativa]	103	249	8e-13
CLV2 [A. thaliana]	105	328	1e-14
FLS2 [A.thaliana]	105	331	1e-19
Xa21 [O. sativa]	105	331	7e-22
Cf-9 [L. pimpinellifolium]	109	332	3e-12
FLS2 [A.thaliana]	109	330	2e-19
FLS2 [A.thaliana]	109	331	5e-20
Cf-9 [L. pimpinellifolium]	118	309	1e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	5	22	in -> out

Report for 5839.m00143

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)