Report for 5977.m00308

 > 5977.m00308, length: 388, copies: 1 

MAEMVVIRPLVSLLKEKVSSYLVEQYKVMKGMEEQRDSLARKLPAILDVIEDAQKGASRPGVVLGSKHSRMCPMK

MSKKLSKVVRTMDVLVRQMNDFGFTQRQQVTPSMQWRQTDSIMIDSDKDIASRSRNEEKEKIIKILVEQEGNGGL

MVLPIVGMGGLGKTTFVQLIYNEPQVKEHFSLQRWCCVSDDFDIGNIARNICHSQEKNHEKALQDLQKELSGQRY

LIVLDDVWNRDADKWGKLLTCLKQGGRGSTILTTTRDAEVARVMTMGVPGAYNLEKLGNKYMKEIIQSRAFRVQK

PNSDELDVIVDKIVDRCVGSPLAAKAFGSMLSTKTSMQEWKDILVKSNICNEKTEILPILKLSYDDLPPHMKQCF

AFCALFPKDYPIN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	109	387	1.2e-54
NB-ARC [Pfam ls]	109	388	4.4e-47

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pib [Oryza sativa].	18	388	3e-17
I2 [L. esculentum]	74	386	6e-48
Xa1 [Oryza sativa]	76	385	4e-36
Mla1 [Hordeum vulgare].	130	388	2e-18
RPM1 [A. thaliana]	134	385	3e-28
N [N. glutinosa]	135	385	9e-13
RPS2 [A. thaliana]	135	387	1e-18
L6 [L. usitatissimum]	155	381	6e-11
M [L. usitatissimum]	155	381	1e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5977.m00308

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)