Report for 6062.m00108

 > 6062.m00108, length: 599, copies: 1 

MDSTSNKMKKMEPTSGGRHGTPGQVVGLCAALVTAMAASLLCSTSMALTPDGQALLELKLSFNGSSQRLTTWKPT

DPNPCGWEGISCSFPDLRVQSINLPYMQLGGIISPNIGKLDKLQRIALHQNSLHGPIPSEIKNCTELRAIYLRAN

YLQGGIPSEIGELIHLTILDLSSNLLRGTIPASIGSLTHLRFLNLSTNFFSGEIPNVGVLGTFKSSSFVGNLELC

GLPIQKACRGTLGFPAVLPHSDPLSSAGKRFTNQQQQNIALPEWHCDWLNVNHGSCIDRGAKLVTYQWNLPYSSG

EIIRRLELLDEEDVVGCGGFGTVYKMVMDDGTAFAVKRIDLNREGRDRTFEKELEILGSIRHINLVNLRGYCRLP

TAKLLIYDFLELGSLDCYLHGDAQDDQPLNWNARMKIALGSARGLAYLHHDCSPVIVHRDIKASNILLDRSLEPR

VSDFGLARLLVDNDAHVTTVVAGTFGYLAPEYLQNGHATEKSDVYSFGVLLLELVTGKRPTDACFLKKGLNIVGW

LNTLTGEHRLEEIIDENCGDVEVEAVEAILDIAAMCTDADPGQRPSMSAVLKMLEEEILSPCMSELYYEQHLEL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	165	188	0.0091
LRR [Pfam ls]	189	211	1
Ser/Thr pkinase [Pfam fs]	309	512	1.2e-46
Ser/Thr pkinase [Pfam ls]	309	579	6.7e-44

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	117	140	0.41
LRR [sensitive, ls]	117	140	9.2
LRR [sensitive, ls]	141	164	0.43
LRR [sensitive, ls]	141	164	9.6
LRR [sensitive, ls]	165	188	0.00041
LRR [sensitive, ls]	165	188	0.0091
LRR [sensitive, ls]	189	211	0.045
LRR [sensitive, ls]	189	211	1

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	23	579	5e-49
CLV2 [A. thaliana]	51	205	5e-11
Xa21 [O. sativa]	51	206	5e-20
CLV2 [A. thaliana]	53	204	5e-12
FLS2 [A.thaliana]	80	205	4e-17
CLV2 [A. thaliana]	86	214	3e-12
FLS2 [A.thaliana]	92	205	1e-12
FLS2 [A.thaliana]	93	216	3e-14
Xa21 [O. sativa]	93	205	3e-11
FLS2 [A.thaliana]	94	205	2e-14
Xa21 [O. sativa]	96	205	8e-13
FLS2 [A.thaliana]	97	239	2e-13
FLS2 [A.thaliana]	97	205	9e-13
FLS2 [A.thaliana]	97	205	1e-10
Xa21 [O. sativa]	97	400	1e-24
FLS2 [A.thaliana]	103	222	1e-11
FLS2 [A.thaliana]	104	206	7e-11
FLS2 [A.thaliana]	104	205	9e-11
Cf-9 [L. pimpinellifolium]	115	297	1e-15
Rpg1 [Hordeum vulgare]	308	579	3e-31
Pto [L. esculentum]	310	580	2e-45
Rpg1 [Hordeum vulgare]	311	589	7e-25

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	25	47	in -> out

Report for 6062.m00108

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)