Report for 6205.m00046

 > 6205.m00046, length: 835, copies: 1 

MGMMIIKPRVIMGSSMEGIRIERCRSDTCRIAEPHLPNLLVWNLDQNYLSGPIPSFIGQLTALTELHVGFNPLSG

SLPKELGNLTNLNLLGISLTNFTGELPEELGNLSKLKYLGISLTNFSGQLPEELGNLTKLRQLYTDSAGLSGPFP

STLSRLKNLKLLRASDNNFTGTIPDFIGSLSNLEDLRIGDIVNGSSSLAFISSLTSLDTLVLRNCKISGDLGAVD

FSKFANLTFLDLSFNNISGNVPKSILNLQKLIFLFLGNNSLTGELPDGISPSLTNLDFSYNQLTDYSFAVDCGSN

RSIRVSDNTMYELDSTNLGDSSYYVTSQTRWGVSNVGKLFQAPNDSKIIHSGEKIQNAVDSELFQTARMSPSSLR

YYGLGLENGNYTVLLKFAELGFPDTPTWQSLGRRFFDIYIQGELKEKDFNIRKMAGGKSFTAVYKSYTTTVSKNF

LEIHLFWAGKGTCCIPIQGYYGPLISALSITPNFSPTVRNGVPKKKSKAGAIVGIVIAASVLGSAILFGIFMVIK

KRRRMAKQQEVYEYLKNGSLDKALFGNGSIKLDWATRFEIILGIARGLTYLHEESSVRIVHRDIKASNVLLDTDL

TPKISDFGLAKLYDEKKTHVSTGIAGTFGYLAPEYAMRRHLTEKVDVFAFGVVALEIVAGRSNTDNSLEESKIYL

FEWAWSLYEKEQALGIVDPRLEEFSRDEVYRVIHVALICTQGSPYQRPPMSKVVAMLTGDVEVAEVVTKPNYITE

WQFRGGNTSYVTSHSGSTTPKLSRQKEIDPLTQSPTITGVSHEHEGRSRLDQFVEPCRLLSMAKQGVAAKLDHVR

ASTVSDVDVL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	62	85	0.21
LRR [Pfam ls]	158	181	0.13
LRR [Pfam ls]	206	230	4.8
LRR [Pfam ls]	231	254	0.035
Ser/Thr pkinase [Pfam ls]	506	734	2.4e-13
Ser/Thr pkinase [Pfam fs]	538	660	9.1e-34

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	38	61	3.5
LRR [sensitive, ls]	38	61	93
LRR [sensitive, ls]	62	85	0.0081
LRR [sensitive, ls]	62	85	0.21
LRR [sensitive, ls]	86	109	0.65
LRR [sensitive, ls]	86	109	17
LRR [sensitive, ls]	110	133	0.29
LRR [sensitive, ls]	110	133	7.7
LRR [sensitive, ls]	158	181	0.005
LRR [sensitive, ls]	158	181	0.13
LRR [sensitive, ls]	206	230	0.18
LRR [sensitive, ls]	206	230	4.8
LRR [sensitive, ls]	231	254	0.0013
LRR [sensitive, ls]	231	254	0.035
LRR [sensitive, ls]	255	275	0.34
LRR [sensitive, ls]	255	275	9.1
LRR [sensitive, ls]	277	301	0.28
LRR [sensitive, ls]	277	301	7.4

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	29	274	3e-24
Cf-9 [L. pimpinellifolium]	30	308	1e-11
CLV2 [A. thaliana]	30	289	8e-22
Cf-9 [L. pimpinellifolium]	35	288	4e-21
FLS2 [A.thaliana]	35	289	7e-32
FLS2 [A.thaliana]	35	289	2e-25
Xa21 [O. sativa]	35	322	3e-26
Xa21 [O. sativa]	35	272	2e-25
Xa21 [O. sativa]	35	288	1e-23
CLV2 [A. thaliana]	36	289	3e-20
FLS2 [A.thaliana]	36	307	7e-26
CLV2 [A. thaliana]	37	292	1e-21
Cf-9 [L. pimpinellifolium]	38	289	4e-27
FLS2 [A.thaliana]	38	291	7e-29
Cf-9 [L. pimpinellifolium]	39	328	4e-13
CLV2 [A. thaliana]	39	275	6e-25
CLV2 [A. thaliana]	39	289	3e-19
FLS2 [A.thaliana]	43	288	1e-25
FLS2 [A.thaliana]	47	310	1e-30
CLV2 [A. thaliana]	49	323	7e-19
Cf-9 [L. pimpinellifolium]	55	270	3e-20
CLV2 [A. thaliana]	82	286	2e-12
Rpg1 [Hordeum vulgare]	531	729	1e-21
FLS2 [A.thaliana]	536	732	3e-21
Pto [L. esculentum]	536	742	1e-34
Rpg1 [Hordeum vulgare]	537	733	3e-25

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	502	524	out -> in

Report for 6205.m00046

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)