Report for 6221.m00224

 > 6221.m00224, length: 353, copies: 1 

MRKEVVLVAMVVVVVVSWVVAAGGEAAAAAAAVVVDPAWRFPSARLRDAYVALQTWKQTAIFSDPKNLTADWVGP

AVCAYTGVFCAPLPGAGGAPGEVAVAGVDLNHGDIAGFLDLRYNDFEGAVPRQLFDLPLDAIFLNHNRLRFALPD

NFGNSPASVIVLAGNHFGGCLPASLGNMSATLNEILLINNGLDSCVPPEVGLLREVTVFDVSFNSLAGPLPPEVT

GMRKVEQLDVAHNRLAGAVPEAVCDLPRLKNFTFSYNYFTGEPPSCARVVPAADGDRRNCLPNRPYQRTPRQCAA

FYAAPPVDCAAFQCKPFVPSPLLPPPPPPAYPGPLPPVYPVPYASPPPPPLYR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	229	252	4.9

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	133	156	1.9
LRR [sensitive, ls]	133	156	51
LRR [sensitive, ls]	205	228	1.7
LRR [sensitive, ls]	205	228	46
LRR [sensitive, ls]	229	252	0.18
LRR [sensitive, ls]	229	252	4.9

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	31	270	2e-11
FLS2 [A.thaliana]	94	270	1e-10
FLS2 [A.thaliana]	113	270	5e-11
Xa21 [O. sativa]	113	270	6e-11
CLV2 [A. thaliana]	114	270	1e-15
FLS2 [A.thaliana]	114	270	5e-11
FLS2 [A.thaliana]	114	269	1e-10
Xa21 [O. sativa]	114	272	4e-11
FLS2 [A.thaliana]	119	269	1e-11
FLS2 [A.thaliana]	119	269	1e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	5	22	in -> out

Report for 6221.m00224

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)