Report for 6242.m00126

 > 6242.m00126, length: 342, copies: 1 

MAGDDSGTNRSYQDRWDLGHLVEIERILSHGLISPSYFPYSIVDAIWAIKVEYGIKKNWMGDPCFPSQFKWDGVE

CRNTSDNIPRIISIDLSNSNLHGVISSNFTLLTALEYLNLSGNQLNGPIPDSLCKLNEGSLVFSYGSNGDVCNKT

NLPGSKKRAAILAISIAAPVLVVVSLLIAYLIWRAKGKSNISIPGSEKYHWDRLQKNENRHFTYDELKKLTDNFQ

QFIGEGGFGCVYHGYLEDNTEVAVKIRSEKSSHGFNEFLAELESLTKVRHKNLVSLVGYCSEKAHLALIYEYMPR

GNLFDLLRVKPHISQADLTDPEVAASLALHPSSTSMCPTTMI

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	85	108	4.3
LRR [Pfam ls]	109	132	0.0025
Ser/Thr pkinase [Pfam fs]	223	318	6e-20

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	85	108	0.17
LRR [sensitive, ls]	85	108	4.3
LRR [sensitive, ls]	109	132	9.7e-05
LRR [sensitive, ls]	109	132	0.0025

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	82	307	2e-19
Xa21 [O. sativa]	88	307	1e-15
Pto [L. esculentum]	208	318	6e-19

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	161	183	in -> out

Report for 6242.m00126

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)