Report for 6342.m00172

 > 6342.m00172, length: 987, copies: 1 

MRRHILVICLPLITLLSLSISSSCQSDHQIQTQALLQFKAGLTDPLNNLQTWTNTTSPCRFLGVRCDRRTGAITG

VSLSSMNLSGRISPAIAALTTLTRLELDSNSLSGSVPAELSSCTRLRFLNLSCNGLAGELPDLSALAALDTIDVA

NNDLSGRFPAWVGNLSGLVTLSVGMNSYDPGETPASIGNLKNLTYLYLASSNLRGVIPESIFELAALETLDMSMN

NLAGVIPAAIGNLRQLWKIELYGNNLTGELPPELGRLTGLREIDVSRNQLSGGIPPELAALEGFEVIQLYRNNLS

GQIPAAWGELRSLKSFSAYENRFSGEFPANFGRFSPLNSVDISENAFSGPFPRHLCDGKNLQYLLALQNGFSGEL

PDEYSSCDSLQRFRINKNKLTGSLPAGLWGLPAVTIIDVSDNGFTGSISPAIGDAQSLNQLWLQNNHLDGEIPPE

IGRLGQLQKLYLSNNSFSGEIPPEIGSLSQLTALHLEENALTGRLPGEIGGCARLVEIDVSRNALTGPIPATLSA

LSSLNSLNLSHNAITGAIPAQLVVLKLSSVDFSSNRLTGNVPPALLVIDGDVAFAGNPGLCVGGRSELGVCKVED

GRRDGLARRSLVLVPVLVSATLLLVVGILFVSYRSFKLEELKKRDMEQGGGCGAEWKLESFHPPELDADEICAVG

EENLIGSGGTGRVYRLALKGGGGTVVAVKRLWKGDAARVMAAEMAILGKIRHRNILKLHACLSRGELNFIVYEYM

PRGNLYQALRREAKGGGCGAAAAELDWARRCKIALGAAKGLMYLHHDCTPAIIHRDIKSTNILLDDDYEAKIADF

GIAKIAAEDSAEFSCFAGTHGYLAPELAYSMKVTEKTDVYSFGVVLLELVTGRSPIDPAFGEGKDIVFWLSTKLA

AESIDDVLDPRVAAPSPSSSSAAAAARDREDMIKVLKVAVLCTAKLPAGRPTMRDVVKMLTDAGAGPCSPRGQPP

AARACARSKSCC

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	96	119	0.2
LRR [Pfam ls]	120	142	0.11
LRR [Pfam ls]	192	215	0.33
LRR [Pfam ls]	216	239	3.4
LRR [Pfam ls]	240	263	0.025
LRR [Pfam ls]	264	287	0.024
LRR [Pfam ls]	288	311	3.6
LRR [Pfam ls]	384	407	0.75
LRR [Pfam ls]	432	455	1
LRR [Pfam ls]	456	479	0.0014
LRR [Pfam ls]	480	503	3.2
LRR [Pfam ls]	504	527	0.26
LRR [Pfam ls]	528	548	0.46
Ser/Thr pkinase [Pfam fs]	674	880	9.3e-42
Ser/Thr pkinase [Pfam ls]	674	960	1.9e-35

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	72	95	3.9
LRR [sensitive, ls]	72	95	42
LRR [sensitive, ls]	96	119	0.018
LRR [sensitive, ls]	96	119	0.2
LRR [sensitive, ls]	120	142	0.0096
LRR [sensitive, ls]	120	142	0.11
LRR [sensitive, ls]	143	166	0.82
LRR [sensitive, ls]	143	166	9
LRR [sensitive, ls]	192	215	0.03
LRR [sensitive, ls]	192	215	0.33
LRR [sensitive, ls]	216	239	0.31
LRR [sensitive, ls]	216	239	3.4
LRR [sensitive, ls]	240	263	0.0023
LRR [sensitive, ls]	240	263	0.025
LRR [sensitive, ls]	264	287	0.0022
LRR [sensitive, ls]	264	287	0.024
LRR [sensitive, ls]	288	311	0.33
LRR [sensitive, ls]	288	311	3.6
LRR [sensitive, ls]	312	335	1.3
LRR [sensitive, ls]	312	335	15
LRR [sensitive, ls]	384	407	0.068
LRR [sensitive, ls]	384	407	0.75
LRR [sensitive, ls]	408	431	1.1
LRR [sensitive, ls]	408	431	12
LRR [sensitive, ls]	432	455	0.093
LRR [sensitive, ls]	432	455	1
LRR [sensitive, ls]	456	479	0.00013
LRR [sensitive, ls]	456	479	0.0014
LRR [sensitive, ls]	480	503	0.29
LRR [sensitive, ls]	480	503	3.2
LRR [sensitive, ls]	504	527	0.024
LRR [sensitive, ls]	504	527	0.26
LRR [sensitive, ls]	528	548	0.042
LRR [sensitive, ls]	528	548	0.46
LRR [sensitive, ls]	551	571	1.2
LRR [sensitive, ls]	551	571	13

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Cf-9 [L. pimpinellifolium]	6	567	3e-45
FLS2 [A.thaliana]	13	567	6e-81
CLV2 [A. thaliana]	17	587	1e-66
Xa21 [O. sativa]	34	762	8e-90
Cf-9 [L. pimpinellifolium]	46	585	3e-47
CLV2 [A. thaliana]	60	551	2e-49
FLS2 [A.thaliana]	72	280	5e-20
FLS2 [A.thaliana]	73	960	2e-99
Pto [L. esculentum]	659	957	6e-31
Rpg1 [Hordeum vulgare]	676	878	2e-21
Rpg1 [Hordeum vulgare]	676	972	4e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	611	633	out -> in

Report for 6342.m00172

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)